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Sample GSM217758 Query DataSets for GSM217758
Status Public on Dec 21, 2008
Title Parotid-Male, 71 years
Sample type RNA
 
Source name Human Parotid Gland
Organism Homo sapiens
Characteristics Male Female genotyping
Aging and genotyping
Treatment protocol Fresh parotid tissue were frozen in liquid nitrogen
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using RNeasy kit (Qiagen) according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 13 ug total RNA
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized using standard Affymetrix protocol
Scan protocol GeneChips were scanned using the Affymetrix Scanner
Description Human parotid gland gene expression analysis
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings
 
Submission date Aug 13, 2007
Last update date Aug 28, 2018
Contact name Alaka Srivastava
E-mail(s) [email protected]
Phone 585 273 1424
URL http://www.urmc.rochester.edu/dentistry/faculty/srivastava.cfm
Organization name University of Rochester Medical Center
Department Oral Biology
Street address 601 Elmwood Avenue
City Rochester
State/province NY
ZIP/Postal code 14642
Country USA
 
Platform ID GPL570
Series (1)
GSE8764 Age and Gender Related Changes in Human Parotid Gland Gene Expression
Relations
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
ID_REF VALUE ABS_CALL
1007_s_at 3010.82 P
1053_at 291.265 P
117_at 109.064 P
121_at 443.983 P
1255_g_at 23.5004 A
1294_at 327.941 A
1316_at 388.405 P
1320_at 109.856 A
1405_i_at 240.954 P
1431_at 49.7223 A
1438_at 160.35 A
1487_at 631.657 P
1494_f_at 70.3029 P
1598_g_at 948.946 P
160020_at 478.389 P
1729_at 392.868 P
1773_at 81.3959 A
177_at 123.975 P
179_at 364.923 P
1861_at 193.839 P

Total number of rows: 54613

Table truncated, full table size 1103 Kbytes.




Supplementary file Size Download File type/resource
GSM217758.CEL.gz 4.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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