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Sample GSM2200258 Query DataSets for GSM2200258
Status Public on May 15, 2019
Title N107Quit_16wk
Sample type RNA
 
Source name Nasal Epithelium
Organism Homo sapiens
Characteristics tissue: nasal epithelium
patient id: N107
time in weeks: 16
rna integrity number (rin): 7.8
age: 30
gender: F
Extracted molecule total RNA
Extraction protocol RNA was extracted from the cells using miRNeasy mini kit (Qiagen) according to manufacturer's protocol
Label Biotin
Label protocol Affymetrix Suggest Protocol
 
Hybridization protocol Affymetrix Suggest Protocol
Scan protocol Affymetrix Suggest Protocol
Description RNA was extracted from the cells using miRNeasy mini kit (Qiagen) according to manufacturer's protocol
Data processing RMA generated expression value using affy library in R using the custom CDF HuGene10stv1_Hs_ENTREZG_14.1.0 from brainarray.
 
Submission date Jun 14, 2016
Last update date May 15, 2019
Contact name Kahkeshan Hijazi
E-mail(s) [email protected]
Phone +16173099896
Organization name Boston University
Lab Computational Biomedicine
Street address 715 Albany Street
City Boston
State/province MA
ZIP/Postal code 02118
Country USA
 
Platform ID GPL15034
Series (1)
GSE83364 Tobacco-related alterations in airway gene expression are rapidly reversed within weeks following smoking cessation

Data table header descriptions
ID_REF
VALUE The data is RMA normalized using justRMA. The resultant table is on a log2 scale

Data table
ID_REF VALUE
1_at 5.94243546
10_at 2.714332691
100_at 4.500389361
1000_at 3.850709996
10000_at 4.924350625
100009676_at 5.959751677
10001_at 6.452094768
10002_at 4.897750134
10003_at 2.757752282
100033413_at 5.675442165
100033414_at 5.240809687
100033416_at 6.091188322
100033418_at 6.346442469
100033420_at 7.523443758
100033422_at 2.329603259
100033423_at 4.091894992
100033424_at 2.514689189
100033425_at 2.208717495
100033426_at 10.21637344
100033427_at 11.63891241

Total number of rows: 19741

Table truncated, full table size 401 Kbytes.




Supplementary file Size Download File type/resource
GSM2200258_AS_A6_N107v4.CEL.gz 4.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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