NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM22059 Query DataSets for GSM22059
Status Public on Aug 01, 2005
Title E1_T4_R3, two week storage/full recovery
Sample type RNA
 
Source name Kidney 293 HEK Cells
Organism Homo sapiens
Characteristics cell type: 2-D monolayer
stress: 2 wk dry storage
time: 72 hr recovery
antibiotics (yes or no?): yes
Extracted molecule total RNA
 
Description 1x10^7 Human embryonic kidney cell spheroids were grown for 7 days in suspension over agarose prepared with FBS supplemented DMEM containing 50mM HEPES, pH 7.2, and 1xGlutamax-1 (Invitrogen).
Following growth, media was removed and the spheroids were stored on the surface of the agarose in sealed flasks for 2,4, and 6 week intervals at room temperature in the dark.
The samples were compared against unstored controls of both spheroids and monolayer (at 30-40% confluence)samples. All samples were conducted in triplicate.
For each storage timepoint, a set of unrehydrated samples were analyzed, and an additional set of rehydrated samples were analyzed after allowing for growth in a treated tissue culture flask, to assess how well the samples returned to a normal, pre-storage state.
Rehydration was conducted with DMEM (Invitrogen) containing 20%FBS and antibiotics (100U penicillin, 100ug/mL streptomycin, and 0.25ug Fungizone), with HEPES and Glutamax as stated previously.
 
Submission date May 04, 2004
Last update date Mar 07, 2013
Contact name Richard F. Helm
E-mail(s) [email protected]
Phone 540-231-4088
Fax 540-231-9070
URL http://vigen.biochem.vt.edu
Organization name Virginia Polytechnic Institute and State University
Department Biochemistry, Fralin Biotechnology Center
Lab Virginia Tech Center for Genomics
Street address West Campus Drive
City Blacksburg
State/province VA
ZIP/Postal code 24061
Country USA
 
Platform ID GPL96
Series (1)
GSE1364 Long-Term Storage of Human Cells at Ambient Temperature

Data table header descriptions
ID_REF
VALUE 'signal' a measure of the abundance of a transcript
BASELINE baseline intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE BASELINE ABS_CALL DETECTION P-VALUE
1007_s_at 2755 2058 P 0.0011411
1053_at 1990 2622 P 0.000804598
117_at 386 402 A 0.127645
121_at 3707 3457 P 0.00306668
1255_g_at 128 137 A 0.302547
1294_at 390 403 A 0.175989
1316_at 280 285 P 0.0149366
1320_at 174 188 A 0.47938
1405_i_at 133 123 A 0.764831
1431_at 144 130 P 0.024711
1438_at 670 733 A 0.438361
1487_at 1205 1164 P 0.00998544
1494_f_at 547 570 A 0.0738301
1598_g_at 3396 2469 P 0.0114474
160020_at 1418 1470 P 0.0439678
1729_at 669 763 M 0.0544704
1773_at 526 650 M 0.0604193
177_at 268 242 P 0.0149366
179_at 3422 3847 M 0.0604193
1861_at 408 503 P 0.0130918

Total number of rows: 22283

Table truncated, full table size 688 Kbytes.




Supplementary file Size Download File type/resource
GSM22059.CEL.gz 4.0 Mb (ftp)(http) CEL
GSM22059.DAT.gz 36.4 Mb (ftp)(http) DAT

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap