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Sample GSM22068 Query DataSets for GSM22068
Status Public on Aug 01, 2005
Title E1_T7_R3, Control, monolayer, antibiotics
Sample type RNA
 
Source name Kidney 293 HEK Cells
Organism Homo sapiens
Characteristics cell type: 2-D monolayer
stress: no dry storage
time: n/a
antibiotics (yes or no?): yes
Extracted molecule total RNA
 
Description 1x10^7 Human embryonic kidney cell spheroids were grown for 7 days in suspension over agarose prepared with FBS supplemented DMEM containing 50mM HEPES, pH 7.2, and 1xGlutamax-1 (Invitrogen).
Following growth, media was removed and the spheroids were stored on the surface of the agarose in sealed flasks for 2,4, and 6 week intervals at room temperature in the dark.
The samples were compared against unstored controls of both spheroids and monolayer (at 30-40% confluence)samples. All samples were conducted in triplicate.
For each storage timepoint, a set of unrehydrated samples were analyzed, and an additional set of rehydrated samples were analyzed after allowing for growth in a treated tissue culture flask, to assess how well the samples returned to a normal, pre-storage state.
Rehydration was conducted with DMEM (Invitrogen) containing 20%FBS and antibiotics (100U penicillin, 100ug/mL streptomycin, and 0.25ug Fungizone), with HEPES and Glutamax as stated previously.
 
Submission date May 04, 2004
Last update date Mar 07, 2013
Contact name Richard F. Helm
E-mail(s) [email protected]
Phone 540-231-4088
Fax 540-231-9070
URL http://vigen.biochem.vt.edu
Organization name Virginia Polytechnic Institute and State University
Department Biochemistry, Fralin Biotechnology Center
Lab Virginia Tech Center for Genomics
Street address West Campus Drive
City Blacksburg
State/province VA
ZIP/Postal code 24061
Country USA
 
Platform ID GPL96
Series (1)
GSE1364 Long-Term Storage of Human Cells at Ambient Temperature

Data table header descriptions
ID_REF
VALUE 'signal' a measure of the abundance of a transcript
BASELINE baseline intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE BASELINE ABS_CALL DETECTION P-VALUE
1007_s_at 3150 2058 P 0.00222768
1053_at 2613 2622 P 0.000321521
117_at 521 402 A 0.175989
121_at 3905 3457 P 0.00868918
1255_g_at 141 137 A 0.175989
1294_at 469 403 A 0.234557
1316_at 278 285 P 0.00418033
1320_at 198 188 A 0.561639
1405_i_at 119 123 A 0.834732
1431_at 153 130 P 0.0393654
1438_at 824 733 A 0.397994
1487_at 1337 1164 P 0.024711
1494_f_at 663 570 M 0.0544704
1598_g_at 3071 2469 P 0.0351629
160020_at 1577 1470 A 0.0738301
1729_at 806 763 A 0.267463
1773_at 579 650 A 0.107301
177_at 260 242 A 0.127645
179_at 5031 3847 P 0.0489947
1861_at 575 503 P 0.00564279

Total number of rows: 22283

Table truncated, full table size 686 Kbytes.




Supplementary file Size Download File type/resource
GSM22068.CEL.gz 3.9 Mb (ftp)(http) CEL
GSM22068.dat.gz 34.8 Mb (ftp)(http) DAT

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