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GEO accession:
Sample GSM22455
Query DataSets for GSM22455
Status
Public on Jun 07, 2004
Title
whole tissue section from case 280
Sample type
RNA
Channel 1
Source name
RNA from whole tissue section of case 280 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
whole tissue section of breast cancer.
Clinical information: Sample.ID=280;Tumor.type=D;Size=2.2;Grade=3;Nodes=0/12;ER=Pos;PR=Pos;HER2=Neg;Age=66;DFS=44;Status=recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
May 27, 2005
Contact name
Xiao-Jun Ma
E-mail(s)
[email protected]
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1379
breast cancer / tamoxifen monotherapy (whole tissue tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
-0.6221853
2877.0
2400.0
0.6496860306935395
6459
-0.0495103
572.5
536.0
0.9662643786793899
16790
-0.4559913
202.5
137.0
0.7290093920085432
4210
0.0185123
129.0
120.5
1.0129140972902233
13392
0.3386523
3155.0
5683.5
1.2645742116932752
1575
0.1019413
108.0
106.5
1.0732161562049043
9300
0.2591133
209.0
234.0
1.1967430415734746
5306
0.1164163
126.5
126.5
1.084038198550174
4514
-0.2687193
136.0
104.0
0.8300561907492707
8664
0.9577093
124.0
223.5
1.9422228454751482
1645
0.3792313
184.5
224.0
1.300647958450629
13828
0.2553563
111.0
122.0
1.1936300737231649
3944
-0.1480613
117.0
97.0
0.9024627356887565
500
0.4485453
1651.5
2765.5
1.3646635468241466
21226
-0.0722763
149.0
131.0
0.9511361096205511
15545
-2.0439823
1319.0
312.5
0.24249344874142092
6346
0.4202653
356.0
456.0
1.338173256271193
4381
0.0362003
98.0
92.0
1.0254093703849667
3385
-0.1309343
3383.0
4311.5
0.913240285157657
19553
-0.0105153
114.5
104.5
0.9927382584846688
Total number of rows:
22575
Table truncated, full table size
1057 Kbytes
.
Supplementary data files not provided
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