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GEO accession:
Sample GSM22468
Query DataSets for GSM22468
Status
Public on Jun 07, 2004
Title
whole tissue section from case 605
Sample type
RNA
Channel 1
Source name
RNA from whole tissue section of case 605 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
whole tissue section of breast cancer.
Clinical information: Sample.ID=605;Tumor.type=D;Size=2.2;Grade=2;Nodes=6/18;ER=Pos;PR=Pos;HER2=Neg;Age=70;DFS=110;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
May 27, 2005
Contact name
Xiao-Jun Ma
E-mail(s)
[email protected]
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1379
breast cancer / tamoxifen monotherapy (whole tissue tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
-1.3129503
3513.0
1798.0
0.4024969820973679
6459
-0.1353233
783.0
737.5
0.910466199690195
16790
0.6722633
263.0
394.0
1.593570915615201
4210
0.1646743
149.0
142.0
1.120912641647775
13392
-0.2674453
3468.0
3970.0
0.8307896099053445
1575
0.2021503
164.0
163.0
1.1504112268800726
9300
0.2608033
197.5
210.5
1.198145382617344
5306
0.0260503
158.0
137.0
1.0182201499807744
4514
-0.1079883
163.0
128.5
0.9278812869653231
8664
0.4511203
144.0
169.0
1.3671014706475004
1645
1.0577363
279.0
558.5
2.0816626373054787
13828
0.8569703
164.0
265.0
1.8112307443815863
3944
-0.1720663
145.0
107.0
0.8875708287879324
500
0.3081183
1855.0
2876.0
1.238091143580132
21226
0.4168993
274.0
342.0
1.335054649586005
15545
-2.4975423
1598.0
289.0
0.17707818164246597
6346
-0.1767453
410.0
347.0
0.88469671769396
4381
0.2150003
117.5
112.0
1.1607036151309373
3385
0.0396513
3711.0
5462.5
1.0278652099631294
19553
1.3129293
167.5
380.5
2.4844539041805445
Total number of rows:
22575
Table truncated, full table size
1060 Kbytes
.
Supplementary data files not provided
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