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Sample GSM226736 Query DataSets for GSM226736
Status Public on Sep 11, 2007
Title CC11+
Sample type genomic
 
Channel 1
Source name CC11+
Organism Homo sapiens
Characteristics DNA from cervical cancer cell line (HPV67)
Extracted molecule genomic DNA
Extraction protocol DNA was isolated using the salting out procedure according to Miller and Polesky
Label Cy3
Label protocol Cy3-dCTPs
 
Channel 2
Source name Pooled reference DNA
Organism Homo sapiens
Characteristics commercially available female DNAs (Promega, Leiden, the Netherlands) that represent DNA pools derived from at least seven individuals
Extracted molecule genomic DNA
Extraction protocol commercially available female DNA
Label Cy5
Label protocol Cy5-dCTPs
 
 
Hybridization protocol Competitive hybridization
Scan protocol GenePix Personal 4100A scanner (Axon Instruments, Westburg BV, Leusden, the Netherlands).
Description Copy number analysis of cervical cancer cell lines
Data processing limma
 
Submission date Sep 04, 2007
Last update date Aug 14, 2011
Contact name Jan Oosting
Phone +31 71 5266619
Organization name Leiden University Medical Center
Department Pathology
Street address Albinusdreef 2
City Leiden
ZIP/Postal code 2333ZA
Country Netherlands
 
Platform ID GPL4012
Series (1)
GSE8605 Combined arrayCGH and SNP-loss of heterozygosity analysis in cervical cancer

Data table header descriptions
ID_REF
VALUE Green / Red normalized log2 transformed ratio
CN Clone specific copy number
GREEN Raw Green intensity
GREENBG Raw Green background
RED Raw Red intensity
REDBG Raw Red background
FLAGS Genepix Flags

Data table
ID_REF VALUE CN GREEN GREENBG RED REDBG FLAGS
1 -0.0343721073918021 1.98146465000628 4867 107 8419 151 0
2 0.00169599394582876 1.98146465000628 5037 110 8507 151 0
3 -0.0134327706277657 1.98146465000628 4957 109 8456 151 0
4 -0.128723293351790 1.84708158993135 3440 107 6428 151 0
5 -0.114752405044263 1.84708158993135 3395 107 6289 153 0
6 -0.104628188657451 1.84708158993135 3778 111 6917 154 0
7 -0.201718957306695 1.73725378056997 3794 112 7407 154 0
8 -0.203989513205406 1.73725378056997 3875 110 7572 153 0
9 -0.203191479557792 1.73725378056997 4067 111 7916 153 0
10 0.134219650922933 2.23191299180134 2068 112 3238 154 0
11 0.163371029622427 2.23191299180134 2059 112 3163 154 0
12 0.158280786690653 2.23191299180134 2068 109 3191 153 0
13 0.0692110799725044 2.09828563178862 4460 110 7220 153 0
14 0.0659648850979099 2.09828563178862 4305 111 7001 153 0
15 0.108921229968093 2.09828563178862 4608 111 7244 151 0
16 -0.132570738843372 1.80520922505008 4184 108 7762 151 0
17 -0.156424996886008 1.80520922505008 4257 106 8011 153 0
18 -0.147833943802063 1.80520922505008 4278 109 7997 153 0
19 0.0606157378658366 2.08582155404737 3725 111 6120 154 0
20 0.0711110681577438 2.08582155404737 3595 112 5869 153 0

Total number of rows: 12800

Table truncated, full table size 727 Kbytes.




Supplementary file Size Download File type/resource
GSM226736.gpr.gz 1.0 Mb (ftp)(http) GPR
Processed data included within Sample table
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