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Sample GSM2328922 Query DataSets for GSM2328922
Status Public on Jan 30, 2017
Title GHE0015 [expression]
Sample type RNA
 
Source name DLBCL tumor biopsy
Organism Homo sapiens
Characteristics ID: GHE0015A
diagnosis: DLBCL
age: 51
Sex: MALE
Stage: STAGE 1
treatment: R-ACVBP+Conso
ipi: 0
age_adjusted_ipi: 0
pfs_time: 43.95893224
cens_pfs: 1
os_time: 43.95893224
cens_os: 1
coo: GC
Extracted molecule total RNA
Extraction protocol Total RNA was isolated with the miRNeasy mini kit (Qiagen).
Label biotin
Label protocol Biotinylated cRNA was prepared by Expression Analysis, Inc. (Durham, NC).
 
Hybridization protocol Hybridization of cRNA on Affymetrix GeneChip Human Genome U133 Plus 2.0 arrays was performed by Expression Analysis, Inc.
Scan protocol GeneChips were scanned with the GeneChip Scanner 3000 (Affymetrix). Images were analyzed with the Gene ChipĀ® Operating Software (GCOS) 1.4
Description Characteristics definitions:
ID: sample ID
AGE: age at diagnosis
SEX: male (M) or female (F)
TREATMENT: treatment line used
IPI: calculated IPI
Age_Adjusted_IPI: calculated age-adjusted IPI
PFS_TIME: duration of progression free survival (PFS) in months
CENS_PFS: coded as 0 if PFS event, 1 if not
OS_TIME: duration of overall survival (OS) in months
CENS_OS: coded as 0 if OS event, 1 if not
COO: cell of origin according to Affymetrix GeneChip arrays as described in methods
Data processing The data were analyzed with GeneSpring software (Agilent Technologies) using default settings and the RMA normalization and summarization algorithm.
 
Submission date Sep 26, 2016
Last update date Dec 06, 2019
Contact name Sydney Dubois
Organization name Centre Henri Becquerel
Lab INSERM U918
Street address Rue d'Amiens
City Rouen
ZIP/Postal code 76000
Country France
 
Platform ID GPL570
Series (2)
GSE87371 Expression data from Diffuse Large B Cell Lymphoma (DLBCL) patients
GSE136971 Expression data and Copy Number Variations from Diffuse Large B Cell Lymphoma (DLBCL) patients

Data table header descriptions
ID_REF
VALUE log2 GC-RMA

Data table
ID_REF VALUE
1007_s_at 3.713614002
1053_at 7.450524601
117_at 3.744485355
121_at 3.16081588
1255_g_at 1.929896355
1294_at 4.116446814
1316_at 3.436896475
1320_at 1.411330672
1405_i_at 11.4829694
1431_at 1.774580059
1438_at 1.46320655
1487_at 4.268334371
1494_f_at 1.693374129
1552256_a_at 5.625532307
1552257_a_at 4.874121678
1552258_at 3.234174884
1552261_at 1.879384398
1552263_at 7.47278637
1552264_a_at 6.116838163
1552266_at 1.526507503

Total number of rows: 54675

Table truncated, full table size 1211 Kbytes.




Supplementary file Size Download File type/resource
GSM2328922_0015-lymphome-GHEDID-U133plus2-_3_-190911_HG-U133_Plus_2_.CEL.gz 4.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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