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Sample GSM2328988 Query DataSets for GSM2328988
Status Public on Jan 30, 2017
Title GHE0506 [expression]
Sample type RNA
 
Source name DLBCL tumor biopsy
Organism Homo sapiens
Characteristics ID: GHE0506A
diagnosis: DLBCL
age: 29
Sex: FEMALE
Stage: STAGE 1
treatment: R-ACVBP+Conso
ipi: 0
age_adjusted_ipi: 0
pfs_time: 50.10266941
cens_pfs: 1
os_time: 50.10266941
cens_os: 1
coo: GC
Extracted molecule total RNA
Extraction protocol Total RNA was isolated with the miRNeasy mini kit (Qiagen).
Label biotin
Label protocol Biotinylated cRNA was prepared by Expression Analysis, Inc. (Durham, NC).
 
Hybridization protocol Hybridization of cRNA on Affymetrix GeneChip Human Genome U133 Plus 2.0 arrays was performed by Expression Analysis, Inc.
Scan protocol GeneChips were scanned with the GeneChip Scanner 3000 (Affymetrix). Images were analyzed with the Gene ChipĀ® Operating Software (GCOS) 1.4
Description Characteristics definitions:
ID: sample ID
AGE: age at diagnosis
SEX: male (M) or female (F)
TREATMENT: treatment line used
IPI: calculated IPI
Age_Adjusted_IPI: calculated age-adjusted IPI
PFS_TIME: duration of progression free survival (PFS) in months
CENS_PFS: coded as 0 if PFS event, 1 if not
OS_TIME: duration of overall survival (OS) in months
CENS_OS: coded as 0 if OS event, 1 if not
COO: cell of origin according to Affymetrix GeneChip arrays as described in methods
Data processing The data were analyzed with GeneSpring software (Agilent Technologies) using default settings and the RMA normalization and summarization algorithm.
 
Submission date Sep 26, 2016
Last update date Dec 06, 2019
Contact name Sydney Dubois
Organization name Centre Henri Becquerel
Lab INSERM U918
Street address Rue d'Amiens
City Rouen
ZIP/Postal code 76000
Country France
 
Platform ID GPL570
Series (2)
GSE87371 Expression data from Diffuse Large B Cell Lymphoma (DLBCL) patients
GSE136971 Expression data and Copy Number Variations from Diffuse Large B Cell Lymphoma (DLBCL) patients

Data table header descriptions
ID_REF
VALUE log2 GC-RMA

Data table
ID_REF VALUE
1007_s_at 3.90164857
1053_at 7.225055171
117_at 2.225362373
121_at 2.875456864
1255_g_at 3.356881114
1294_at 2.764031553
1316_at 3.121398809
1320_at 1.407176785
1405_i_at 9.328694929
1431_at 1.632529169
1438_at 1.373813868
1487_at 4.964690204
1494_f_at 1.557334058
1552256_a_at 5.109614903
1552257_a_at 5.941573964
1552258_at 2.585370875
1552261_at 1.689717903
1552263_at 6.800836548
1552264_a_at 5.374461125
1552266_at 1.78562215

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM2328988_0506-lymphome-GHEDID-U133plus2-_2_-180711_HG-U133_Plus_2_.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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