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Sample GSM2329086 Query DataSets for GSM2329086
Status Public on Jan 30, 2017
Title GHE1229 [expression]
Sample type RNA
 
Source name DLBCL tumor biopsy
Organism Homo sapiens
Characteristics ID: GHE1229A
diagnosis: DLBCL
age: 63
Sex: FEMALE
Stage: STAGE 3
treatment: R-CHOP14
ipi: 2
age_adjusted_ipi: 1
pfs_time: 34.06981519
cens_pfs: 1
os_time: 34.06981519
cens_os: 1
coo: ABC
Extracted molecule total RNA
Extraction protocol Total RNA was isolated with the miRNeasy mini kit (Qiagen).
Label biotin
Label protocol Biotinylated cRNA was prepared by Expression Analysis, Inc. (Durham, NC).
 
Hybridization protocol Hybridization of cRNA on Affymetrix GeneChip Human Genome U133 Plus 2.0 arrays was performed by Expression Analysis, Inc.
Scan protocol GeneChips were scanned with the GeneChip Scanner 3000 (Affymetrix). Images were analyzed with the Gene ChipĀ® Operating Software (GCOS) 1.4
Description Characteristics definitions:
ID: sample ID
AGE: age at diagnosis
SEX: male (M) or female (F)
TREATMENT: treatment line used
IPI: calculated IPI
Age_Adjusted_IPI: calculated age-adjusted IPI
PFS_TIME: duration of progression free survival (PFS) in months
CENS_PFS: coded as 0 if PFS event, 1 if not
OS_TIME: duration of overall survival (OS) in months
CENS_OS: coded as 0 if OS event, 1 if not
COO: cell of origin according to Affymetrix GeneChip arrays as described in methods
Data processing The data were analyzed with GeneSpring software (Agilent Technologies) using default settings and the RMA normalization and summarization algorithm.
 
Submission date Sep 26, 2016
Last update date Dec 06, 2019
Contact name Sydney Dubois
Organization name Centre Henri Becquerel
Lab INSERM U918
Street address Rue d'Amiens
City Rouen
ZIP/Postal code 76000
Country France
 
Platform ID GPL570
Series (2)
GSE87371 Expression data from Diffuse Large B Cell Lymphoma (DLBCL) patients
GSE136971 Expression data and Copy Number Variations from Diffuse Large B Cell Lymphoma (DLBCL) patients

Data table header descriptions
ID_REF
VALUE log2 GC-RMA

Data table
ID_REF VALUE
1007_s_at 3.056355754
1053_at 7.322424116
117_at 3.117421481
121_at 3.374350967
1255_g_at 1.47476463
1294_at 3.417739849
1316_at 3.354271894
1320_at 1.836336827
1405_i_at 10.89794584
1431_at 1.835726886
1438_at 1.571707334
1487_at 4.276283905
1494_f_at 1.843100833
1552256_a_at 5.564609386
1552257_a_at 5.906631311
1552258_at 2.314136627
1552261_at 1.935042459
1552263_at 8.237938129
1552264_a_at 6.901428974
1552266_at 1.604268322

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM2329086_1229-Lymphome-GHEDID-U133plus2-_A4_-171011_HG-U133_Plus_2_.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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