NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM2329089 Query DataSets for GSM2329089
Status Public on Jan 30, 2017
Title GHE1311 [expression]
Sample type RNA
 
Source name DLBCL tumor biopsy
Organism Homo sapiens
Characteristics ID: GHE1311A
diagnosis: DLBCL
age: 56
Sex: MALE
Stage: STAGE 2
treatment: R-ACVBP+Conso
ipi: 0
age_adjusted_ipi: 0
pfs_time: 55.19507187
cens_pfs: 1
os_time: 55.19507187
cens_os: 1
coo: GC
Extracted molecule total RNA
Extraction protocol Total RNA was isolated with the miRNeasy mini kit (Qiagen).
Label biotin
Label protocol Biotinylated cRNA was prepared by Expression Analysis, Inc. (Durham, NC).
 
Hybridization protocol Hybridization of cRNA on Affymetrix GeneChip Human Genome U133 Plus 2.0 arrays was performed by Expression Analysis, Inc.
Scan protocol GeneChips were scanned with the GeneChip Scanner 3000 (Affymetrix). Images were analyzed with the Gene ChipĀ® Operating Software (GCOS) 1.4
Description Characteristics definitions:
ID: sample ID
AGE: age at diagnosis
SEX: male (M) or female (F)
TREATMENT: treatment line used
IPI: calculated IPI
Age_Adjusted_IPI: calculated age-adjusted IPI
PFS_TIME: duration of progression free survival (PFS) in months
CENS_PFS: coded as 0 if PFS event, 1 if not
OS_TIME: duration of overall survival (OS) in months
CENS_OS: coded as 0 if OS event, 1 if not
COO: cell of origin according to Affymetrix GeneChip arrays as described in methods
Data processing The data were analyzed with GeneSpring software (Agilent Technologies) using default settings and the RMA normalization and summarization algorithm.
 
Submission date Sep 26, 2016
Last update date Dec 06, 2019
Contact name Sydney Dubois
Organization name Centre Henri Becquerel
Lab INSERM U918
Street address Rue d'Amiens
City Rouen
ZIP/Postal code 76000
Country France
 
Platform ID GPL570
Series (2)
GSE87371 Expression data from Diffuse Large B Cell Lymphoma (DLBCL) patients
GSE136971 Expression data and Copy Number Variations from Diffuse Large B Cell Lymphoma (DLBCL) patients

Data table header descriptions
ID_REF
VALUE log2 GC-RMA

Data table
ID_REF VALUE
1007_s_at 3.199410667
1053_at 6.949000311
117_at 3.281266473
121_at 3.137493041
1255_g_at 2.001199925
1294_at 3.372435092
1316_at 3.197903266
1320_at 1.330592213
1405_i_at 11.17446184
1431_at 1.523521312
1438_at 1.799295062
1487_at 4.705742772
1494_f_at 1.797187533
1552256_a_at 6.170399652
1552257_a_at 4.987901111
1552258_at 2.733855438
1552261_at 1.90921305
1552263_at 7.498331323
1552264_a_at 6.127161924
1552266_at 1.557547604

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM2329089_1311-lymphome-GHEDID-U133plus2-_20_-060911_HG-U133_Plus_2_.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap