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Sample GSM2329099 Query DataSets for GSM2329099
Status Public on Jan 30, 2017
Title GHE1380 [expression]
Sample type RNA
 
Source name DLBCL tumor biopsy
Organism Homo sapiens
Characteristics ID: GHE1380A
diagnosis: DLBCL
age: 77
Sex: FEMALE
Stage: STAGE 4
treatment: R-CHOP14
ipi: 3
age_adjusted_ipi: 2
pfs_time: 4.63244353
cens_pfs: 0
os_time: 4.63244353
cens_os: 0
coo: GC
Extracted molecule total RNA
Extraction protocol Total RNA was isolated with the miRNeasy mini kit (Qiagen).
Label biotin
Label protocol Biotinylated cRNA was prepared by Expression Analysis, Inc. (Durham, NC).
 
Hybridization protocol Hybridization of cRNA on Affymetrix GeneChip Human Genome U133 Plus 2.0 arrays was performed by Expression Analysis, Inc.
Scan protocol GeneChips were scanned with the GeneChip Scanner 3000 (Affymetrix). Images were analyzed with the Gene ChipĀ® Operating Software (GCOS) 1.4
Description Characteristics definitions:
ID: sample ID
AGE: age at diagnosis
SEX: male (M) or female (F)
TREATMENT: treatment line used
IPI: calculated IPI
Age_Adjusted_IPI: calculated age-adjusted IPI
PFS_TIME: duration of progression free survival (PFS) in months
CENS_PFS: coded as 0 if PFS event, 1 if not
OS_TIME: duration of overall survival (OS) in months
CENS_OS: coded as 0 if OS event, 1 if not
COO: cell of origin according to Affymetrix GeneChip arrays as described in methods
Data processing The data were analyzed with GeneSpring software (Agilent Technologies) using default settings and the RMA normalization and summarization algorithm.
 
Submission date Sep 26, 2016
Last update date Dec 06, 2019
Contact name Sydney Dubois
Organization name Centre Henri Becquerel
Lab INSERM U918
Street address Rue d'Amiens
City Rouen
ZIP/Postal code 76000
Country France
 
Platform ID GPL570
Series (2)
GSE87371 Expression data from Diffuse Large B Cell Lymphoma (DLBCL) patients
GSE136971 Expression data and Copy Number Variations from Diffuse Large B Cell Lymphoma (DLBCL) patients

Data table header descriptions
ID_REF
VALUE log2 GC-RMA

Data table
ID_REF VALUE
1007_s_at 3.32975032
1053_at 6.824341363
117_at 2.322220946
121_at 3.274750614
1255_g_at 1.29714279
1294_at 5.251594866
1316_at 2.83001304
1320_at 1.399106975
1405_i_at 10.41895586
1431_at 2.058334235
1438_at 1.515307483
1487_at 4.577765354
1494_f_at 1.96242108
1552256_a_at 6.703091551
1552257_a_at 4.346498214
1552258_at 2.293111064
1552261_at 1.570694408
1552263_at 7.5253171
1552264_a_at 5.682276475
1552266_at 1.434533282

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM2329099_1380-lymphome-GHEDID-U133plus2-_C1_-101011_HG-U133_Plus_2_.CEL.gz 4.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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