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Sample GSM2343909 Query DataSets for GSM2343909
Status Public on Nov 08, 2016
Title small RNA-seq from right lobe of liver (ENCLB496AQV)
Sample type SRA
 
Source name Homo sapiens right lobe of liver tissue female adult (53 years)
Organism Homo sapiens
Characteristics tissue_type: right lobe of liver
biomaterial_type: tissue
description: Liver tissue from a 53 year old female received by the Gingeras lab to do RNA-Seq assay on from GTEx.
biosample encode accession: ENCBS796JPW (SAMN05897573)
age: 53 year
dev stage: adult
donor_id: ENCDO793LXB
Sex: female
lab: Thomas Gingeras, CSHL
link: ENCBS796JPW at ENCODE; https://www.encodeproject.org/ENCBS796JPW/
link: Derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/
Extracted molecule total RNA
Extraction protocol extraction method: see document
general protocol: https://www.encodeproject.org/documents/3d5badd5-026b-4268-a647-a18580432f8e/@@download/attachment/LID296635.pdf
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NextSeq 500
 
Description https://www.encodeproject.org/experiments/ENCSR603XUX/
***************
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's right lobe of liver tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
experiment encode accession: ENCSR603XUX
assay title: small RNA-seq
assembly: GRCh38, hg19
encode release date: 2016-08-05
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB496AQV
size range: <200
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Oct 13, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) [email protected]
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL18573
Series (1)
GSE88393 small RNA-seq from right lobe of liver (ENCSR603XUX)
Relations
BioSample SAMN05897573
SRA SRX2244308
Named Annotation GSM2343909_ENCFF711OZK_plus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation GSM2343909_ENCFF689FVD_plus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2343909_ENCFF937NOF_minus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation GSM2343909_ENCFF705KIV_minus_strand_signal_of_unique_reads_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2343909_ENCFF068CNZ_minus_strand_signal_of_unique_reads_hg19.bigWig 929.5 Kb (ftp)(http) BIGWIG
GSM2343909_ENCFF159GDC_gene_quantifications_GRCh38.tsv.gz 286.3 Kb (ftp)(http) TSV
GSM2343909_ENCFF320NFC_plus_strand_signal_of_all_reads_hg19.bigWig 9.4 Mb (ftp)(http) BIGWIG
GSM2343909_ENCFF352EVJ_plus_strand_signal_of_unique_reads_hg19.bigWig 929.7 Kb (ftp)(http) BIGWIG
GSM2343909_ENCFF689FVD_plus_strand_signal_of_all_reads_GRCh38.bigWig 9.6 Mb (ftp)(http) BIGWIG
GSM2343909_ENCFF705KIV_minus_strand_signal_of_unique_reads_GRCh38.bigWig 852.9 Kb (ftp)(http) BIGWIG
GSM2343909_ENCFF711OZK_plus_strand_signal_of_unique_reads_GRCh38.bigWig 851.2 Kb (ftp)(http) BIGWIG
GSM2343909_ENCFF815CFO_minus_strand_signal_of_all_reads_hg19.bigWig 9.4 Mb (ftp)(http) BIGWIG
GSM2343909_ENCFF836FKY_gene_quantifications_hg19.tsv.gz 270.1 Kb (ftp)(http) TSV
GSM2343909_ENCFF937NOF_minus_strand_signal_of_all_reads_GRCh38.bigWig 5.9 Mb (ftp)(http) BIGWIG
GSM2343909_ENCLB496AQV_README.txt.gz 1019 b (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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