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Sample GSM2344680 Query DataSets for GSM2344680
Status Public on Feb 01, 2017
Title Meningioma 3 [miRNA]
Sample type RNA
 
Source name Fresh-frozen meningioma tumor sample
Organism Homo sapiens
Characteristics tissue: Meningioma tumor
location: Parietal Convexity Meningioma
gender: Female
age: 84
Treatment protocol Not Applicable.
Growth protocol Meningial cells were cultured in T75 cell culture flasks in Meningeal Cell Medium.
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Poly-A tailed RNA molecules were labeled with Biotin labeled DNA.
 
Hybridization protocol Hybridization was done for 20 hours as described in FlashTag Biotin HSR RNA Labeling Kit (Affymetrix).
Scan protocol GeneChips were scanned using the GeneAtlas Array scanner.
Description Sample name: 3
miRNA expression data from fresh-frozen meningioma tumor sample.
Data processing The resulting data were analyzed with Transcriptome Analysis Console 3 software.
 
Submission date Oct 13, 2016
Last update date Feb 01, 2017
Contact name Sukru Gulluoglu
E-mail(s) [email protected]
Organization name Yeditepe University
Street address Acibadem Mah. IStek vakfi binasi
City IStanbul
ZIP/Postal code 34587
Country Turkey
 
Platform ID GPL21572
Series (2)
GSE88719 miRNA expression data from meningioma samples and healthy meningial cell line
GSE88721 miRNA and gene expression data from meningioma samples and healthy meningial cell line
Relations
Reanalyzed by GSM2344695

Data table header descriptions
ID_REF
VALUE Log2 RMA signal
DETECTION P-VALUE

Data table
ID_REF VALUE DETECTION P-VALUE
20500112 11.6674 8.72176e-16
20500113 0.961055 0.493719
20500114 0.863299 0.310137
20500115 13.3154 8.72176e-16
20500116 2.44152 0.0627644
20500117 12.0184 8.72176e-16
20500118 1.09738 0.22019
20500119 11.4367 8.72176e-16
20500120 2.62861 0.0442393
20500121 11.5941 8.72176e-16
20500122 1.70996 0.146826
20500123 9.30336 9.48103e-16
20500124 1.60252 0.157224
20500125 0.775327 0.875486
20500126 5.90969 7.94004e-11
20500127 0.844236 0.876679
20500128 10.3103 8.72176e-16
20500129 0.93384 0.67988
20500130 10.571 8.72176e-16
20500131 4.98126 3.01477e-06

Total number of rows: 6658

Table truncated, full table size 172 Kbytes.




Supplementary file Size Download File type/resource
GSM2344680_mirM3.ga.cel.gz 752.1 Kb (ftp)(http) CEL
GSM2344680_mirM3.ga.gbmmenprojectmirna.rma-dabg.chp.gz 68.1 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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