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Sample GSM2344706 Query DataSets for GSM2344706
Status Public on Feb 01, 2017
Title Meningioma 14 [gene]
Sample type RNA
 
Source name Fresh-frozen meningioma tumor sample
Organism Homo sapiens
Characteristics tissue: Meningioma tumor
location: Tuberculum Sella meningioma
gender: Male
age: 58
Treatment protocol Not Applicable.
Growth protocol Meningial cells were cultured in T75 cell culture flasks in Meningeal Cell Medium.
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Fragmented and Labeled ss-cDNA were prepared according to WT PLUS Reagent Kit from 500 ng total RNA.
 
Hybridization protocol 943 ng of ss-cDNA were hybridized for 20 hr at 48C on Human Gene 2.1 ST Array. Array strips were washed and stained in the GeneAtlas Fluidics station (Affymetrix).
Scan protocol GeneChips were scanned using the GeneAtlas Array scanner.
Description Sample name: 14
Gene expression data from fresh-frozen meningioma tumor sample.
Data processing The resulting data were analyzed with Transcriptome Analysis Console 3 software.
 
Submission date Oct 13, 2016
Last update date Feb 01, 2017
Contact name Sukru Gulluoglu
E-mail(s) [email protected]
Organization name Yeditepe University
Street address Acibadem Mah. IStek vakfi binasi
City IStanbul
ZIP/Postal code 34587
Country Turkey
 
Platform ID GPL17692
Series (2)
GSE88720 Gene expression data from meningioma samples and healthy meningial cell line
GSE88721 miRNA and gene expression data from meningioma samples and healthy meningial cell line
Relations
Reanalysis of GSM2344691

Data table header descriptions
ID_REF
VALUE Log2 RMA signal

Data table
ID_REF VALUE
16650001 1.25157
16650003 1.12365
16650005 1.82133
16650007 1.31076
16650009 1.57348
16650011 0.922884
16650013 2.30964
16650015 3.0213
16650017 0.936249
16650019 2.76666
16650021 1.5885
16650023 2.18846
16650025 1.84127
16650027 1.02405
16650029 1.75176
16650031 1.72174
16650033 0.628382
16650035 0.8445
16650037 0.831017
16650041 3.72177

Total number of rows: 53617

Table truncated, full table size 886 Kbytes.




Supplementary file Size Download File type/resource
GSM2344706_M14.ga.cel.gz 4.6 Mb (ftp)(http) CEL
GSM2344706_M14.ga.gbmmenproject.rma-gene-full.chp.gz 330.0 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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