GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM238800
Query DataSets for GSM238800
Status
Public on Oct 23, 2007
Title
HIP_affected_2
Sample type
RNA
Source name
brain, Hippocampus
Organism
Homo sapiens
Characteristics
sample amount: 10 ng
bio-source name: HIP_affected_2
organism: Human
organ/tissue type: brain
organ region: hippocampus
cell type: pyramidal neuron
ethnicity: unknown
developmental stage: Adult
disease state: Alzheimer's Disease
sex: female
genetic variation: None
age: 73 years
Extracted molecule
total RNA
Extraction protocol
Arcturus PicoPure
Label
biotin
Label protocol
Affymetrix double-round expression profiling
Hybridization protocol
Affymetrix's manufacturer's protocol: hybridization onto Affymetrix Human Genome U133 Plus 2.0 array
Scan protocol
Affymetrix GCOS
Description
arrayconsortium.tgen.org::biosample.457250
cortical layer III neurons
Data processing
MAS5.0; target scaling to 150
Submission date
Oct 19, 2007
Last update date
Jun 26, 2019
Contact name
Winnie Liang
E-mail(s)
[email protected]
Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL570
Series (1)
GSE5281
Alzheimer's disease and the normal aged brain (steph-affy-human-433773)
Relations
Reanalyzed by
GSE64985
Reanalyzed by
GSE119087
Reanalyzed by
GSE133349
Data table header descriptions
ID_REF
VALUE
expression signal
ABS_CALL
absent/marginal/present
DETECTION P-VALUE
significance of absent/marginal/absent call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
1321.29
P
6.02111e-05
AFFX-BioB-M_at
2091.51
P
4.42873e-05
AFFX-BioB-3_at
1294.23
P
4.42873e-05
AFFX-BioC-5_at
3765.06
P
4.42873e-05
AFFX-BioC-3_at
3979.93
P
4.42873e-05
AFFX-BioDn-5_at
9248.72
P
4.42873e-05
AFFX-BioDn-3_at
14739.4
P
4.42873e-05
AFFX-CreX-5_at
31306.4
P
5.16732e-05
AFFX-CreX-3_at
36405.2
P
4.42873e-05
AFFX-DapX-5_at
1314.81
P
5.16732e-05
AFFX-DapX-M_at
7138.02
P
4.42873e-05
AFFX-DapX-3_at
19904.5
P
4.42873e-05
AFFX-LysX-5_at
167.499
P
0.000662269
AFFX-LysX-M_at
1415.13
P
5.16732e-05
AFFX-LysX-3_at
4111.73
P
5.16732e-05
AFFX-PheX-5_at
558.963
P
7.00668e-05
AFFX-PheX-M_at
2071.24
P
4.42873e-05
AFFX-PheX-3_at
3589.59
P
4.42873e-05
AFFX-ThrX-5_at
273.066
P
0.000224668
AFFX-ThrX-M_at
1786.01
P
4.42873e-05
Total number of rows:
54675
Table truncated, full table size
1616 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM238800.CEL.gz
4.0 Mb
(ftp)
(http)
CEL
GSM238800.CHP.gz
305.8 Kb
(ftp)
(http)
CHP
Processed data included within Sample table
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
