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Sample GSM238812 Query DataSets for GSM238812
Status Public on Oct 23, 2007
Title MTG_affected_4
Sample type RNA
 
Source name brain, Middle temporal gyrus
Organism Homo sapiens
Characteristics sample amount: 10 ng
bio-source name: MTG_affected_4
organism: Human 
organ/tissue type: brain 
organ region: Medial Temporal Gyrus 
cell type: pyramidal neuron 
ethnicity: unknown 
developmental stage: Adult 
disease state: Alzheimer's Disease 
sex: male 
genetic variation: None 
age: 75 years
Extracted molecule total RNA
Extraction protocol Arcturus PicoPure
Label biotin
Label protocol Affymetrix double-round expression profiling
 
Hybridization protocol Affymetrix's manufacturer's protocol: hybridization onto Affymetrix Human Genome U133 Plus 2.0 array
Scan protocol Affymetrix GCOS
Description arrayconsortium.tgen.org::biosample.457594
cortical layer III neurons
Data processing MAS5.0; target scaling to 150
 
Submission date Oct 19, 2007
Last update date Jun 26, 2019
Contact name Winnie Liang
E-mail(s) [email protected]
Organization name Translational Genomics
Street address 445 N. Fifth Street
City Phoenix
State/province AZ
ZIP/Postal code 85012
Country USA
 
Platform ID GPL570
Series (1)
GSE5281 Alzheimer's disease and the normal aged brain (steph-affy-human-433773)
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087
Reanalyzed by GSE133349

Data table header descriptions
ID_REF
VALUE expression signal
ABS_CALL absent/marginal/present
DETECTION P-VALUE significance of absent/marginal/absent call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1648.67 P 5.16732e-05
AFFX-BioB-M_at 2821.24 P 4.42873e-05
AFFX-BioB-3_at 1741.12 P 4.42873e-05
AFFX-BioC-5_at 5009.5 P 4.42873e-05
AFFX-BioC-3_at 4971.55 P 4.42873e-05
AFFX-BioDn-5_at 11309.3 P 4.42873e-05
AFFX-BioDn-3_at 18758 P 4.42873e-05
AFFX-CreX-5_at 44192.6 P 5.16732e-05
AFFX-CreX-3_at 46136.8 P 4.42873e-05
AFFX-DapX-5_at 1459.73 P 6.02111e-05
AFFX-DapX-M_at 13703.2 P 4.42873e-05
AFFX-DapX-3_at 35759.6 P 4.42873e-05
AFFX-LysX-5_at 187.014 P 0.000169227
AFFX-LysX-M_at 2611.81 P 4.42873e-05
AFFX-LysX-3_at 9486.3 P 4.42873e-05
AFFX-PheX-5_at 547.741 P 7.00668e-05
AFFX-PheX-M_at 2878.96 P 4.42873e-05
AFFX-PheX-3_at 7237.74 P 4.42873e-05
AFFX-ThrX-5_at 321.83 P 4.42873e-05
AFFX-ThrX-M_at 3480.07 P 4.42873e-05

Total number of rows: 54675

Table truncated, full table size 1619 Kbytes.




Supplementary file Size Download File type/resource
GSM238812.CEL.gz 4.2 Mb (ftp)(http) CEL
GSM238812.CHP.gz 305.6 Kb (ftp)(http) CHP
Processed data included within Sample table

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