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Sample GSM239385 Query DataSets for GSM239385
Status Public on Sep 22, 2008
Title vastus lateralis, protein intake: 1.00 g/kg, young, subject 2
Sample type RNA
 
Source name vastus lateralis, protein intake: 1.00 g/kg, young
Organism Homo sapiens
Characteristics Protein intake: 1.00 g/kg
Trial: P125
Sex: Male
Age: Y (21-43 y)
Treatment protocol Three randomized controlled feeding trials with protein intakes of 63% (P63: 0.50 g/kg-1/d-1), 94% (P94: 0.75 g/kg-1/d-1), and 125% (P125: 1.00 g/kg-1/d-1) of the recommended dietary allowance (RDA).
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from the frozen muscle sample using Tri-Reagent following the manufacturerÆs instructions. Isolated total RNA was further purified using RNeasy Mini Kits following manufacturerÆs protocol
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from a minimum of 5 ug total RNA
 
Hybridization protocol Affymetrix protocol
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner
Description Gene expression for younger male following two weeks of dietary protein intake 1.00 g/kg
Data processing The raw data were summarized using Affymetrix Microarray Suite (MAS) 5.0 software
 
Submission date Oct 24, 2007
Last update date Aug 28, 2018
Contact name Wayne Campbell
E-mail(s) [email protected]
Phone 765-494-8236
Fax 765-494-0674
Organization name Purdue University
Department Foods and Nutrition
Street address 700 West State Street
City West Lafayette
State/province IN
ZIP/Postal code 47907
Country USA
 
Platform ID GPL570
Series (1)
GSE9419 The skeletal muscle transcript profile reflects responses to inadequate protein intake in younger and older males
Relations
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE MAS5.0 signal intensity
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
1007_s_at 233.1 P 0.043968
1053_at 51 A 0.175989
117_at 55.1 A 0.284747
121_at 501.7 P 0.019304
1255_g_at 27.4 A 0.458816
1294_at 33.5 A 0.250724
1316_at 55.2 M 0.05447
1320_at 11 A 0.861235
1405_i_at 26.8 A 0.48748
1431_at 10.5 A 0.660442
1438_at 38.4 A 0.52062
1487_at 480.5 P 0.017001
1494_f_at 47 A 0.339558
1552256_a_at 28.4 A 0.398926
1552257_a_at 99.5 A 0.095215
1552258_at 53.2 A 0.080566
1552261_at 13.7 A 0.432373
1552263_at 8 A 0.665527
1552264_a_at 40.3 A 0.111572
1552266_at 7.2 A 0.696289

Total number of rows: 54675

Table truncated, full table size 1411 Kbytes.




Supplementary file Size Download File type/resource
GSM239385.CEL.gz 5.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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