NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM239389 Query DataSets for GSM239389
Status Public on Sep 22, 2008
Title vastus lateralis, protein intake: 0.75 g/kg, old, subject 4
Sample type RNA
 
Source name vastus lateralis, protein intake: 0.75 g/kg, old
Organism Homo sapiens
Characteristics Protein intake: 0.75 g/kg
Trial: P94
Sex: Male
Age: O (63-79 y)
Treatment protocol Three randomized controlled feeding trials with protein intakes of 63% (P63: 0.50 g/kg-1/d-1), 94% (P94: 0.75 g/kg-1/d-1), and 125% (P125: 1.00 g/kg-1/d-1) of the recommended dietary allowance (RDA).
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from the frozen muscle sample using Tri-Reagent following the manufacturerÆs instructions. Isolated total RNA was further purified using RNeasy Mini Kits following manufacturerÆs protocol
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from a minimum of 5 ug total RNA
 
Hybridization protocol Affymetrix protocol
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner
Description Gene expression for older male following 2 weeks of dietary protein intake of 0.75 g/kg
Data processing The raw data were summarized using Affymetrix Microarray Suite (MAS) 5.0 software
 
Submission date Oct 24, 2007
Last update date Aug 28, 2018
Contact name Wayne Campbell
E-mail(s) [email protected]
Phone 765-494-8236
Fax 765-494-0674
Organization name Purdue University
Department Foods and Nutrition
Street address 700 West State Street
City West Lafayette
State/province IN
ZIP/Postal code 47907
Country USA
 
Platform ID GPL570
Series (1)
GSE9419 The skeletal muscle transcript profile reflects responses to inadequate protein intake in younger and older males
Relations
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE MAS5.0 signal intensity
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
1007_s_at 420.8 P 0.013092
1053_at 90.4 A 0.11716
117_at 34.3 A 0.218983
121_at 433.9 P 0.009985
1255_g_at 8.1 A 0.581931
1294_at 38.2 A 0.378184
1316_at 44.1 A 0.098054
1320_at 17.1 A 0.849473
1405_i_at 8.7 A 0.963203
1431_at 17 A 0.302547
1438_at 12.6 A 0.837065
1487_at 354.2 P 0.031336
1494_f_at 86.5 A 0.11716
1552256_a_at 26.9 A 0.567627
1552257_a_at 123.4 A 0.111572
1552258_at 82.7 A 0.129639
1552261_at 13.2 A 0.466064
1552263_at 4.3 A 0.72583
1552264_a_at 60.8 P 0.023926
1552266_at 8.9 A 0.696289

Total number of rows: 54675

Table truncated, full table size 1409 Kbytes.




Supplementary file Size Download File type/resource
GSM239389.CEL.gz 5.6 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap