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Sample GSM239396 Query DataSets for GSM239396
Status Public on Sep 22, 2008
Title vastus lateralis, protein intake:0.50 g/kg, young, subject 9
Sample type RNA
 
Source name vastus lateralis, protein intake:0.50 g/kg, young
Organism Homo sapiens
Characteristics Protein intake:0.50 g/kg
Trial:P63
Sex: Male
Age: Y (21-43 y)
Treatment protocol Three randomized controlled feeding trials with protein intakes of 63% (P63: 0.50 g/kg-1/d-1), 94% (P94: 0.75 g/kg-1/d-1), and 125% (P125: 1.00 g/kg-1/d-1) of the recommended dietary allowance (RDA).
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from the frozen muscle sample using Tri-Reagent following the manufacturerÆs instructions. Isolated total RNA was further purified using RNeasy Mini Kits following manufacturerÆs protocol
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from a minimum of 5 ug total RNA
 
Hybridization protocol Affymetrix protocol
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner
Description Gene expression for young male following two weeks of dietary protein intake of 0.50 g/kg
Data processing The raw data were summarized using Affymetrix Microarray Suite (MAS) 5.0 software
 
Submission date Oct 24, 2007
Last update date Aug 28, 2018
Contact name Wayne Campbell
E-mail(s) [email protected]
Phone 765-494-8236
Fax 765-494-0674
Organization name Purdue University
Department Foods and Nutrition
Street address 700 West State Street
City West Lafayette
State/province IN
ZIP/Postal code 47907
Country USA
 
Platform ID GPL570
Series (1)
GSE9419 The skeletal muscle transcript profile reflects responses to inadequate protein intake in younger and older males
Relations
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE MAS5.0 signal intensity
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
1007_s_at 341.6 P 0.014937
1053_at 103.8 P 0.019304
117_at 22.3 A 0.339558
121_at 249.1 P 0.014937
1255_g_at 12.1 A 0.458816
1294_at 16.5 A 0.378184
1316_at 31.9 P 0.000959
1320_at 9.8 A 0.67917
1405_i_at 11.6 A 0.562354
1431_at 35.4 A 0.175989
1438_at 7.7 A 0.918663
1487_at 450.4 P 0.013092
1494_f_at 54.5 A 0.162935
1552256_a_at 32.1 A 0.334473
1552257_a_at 145.4 P 0.023926
1552258_at 47.2 A 0.111572
1552261_at 11.8 A 0.27417
1552263_at 9.1 A 0.567627
1552264_a_at 70.3 P 0.001953
1552266_at 44 A 0.095215

Total number of rows: 54675

Table truncated, full table size 1409 Kbytes.




Supplementary file Size Download File type/resource
GSM239396.CEL.gz 5.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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