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Sample GSM239408 Query DataSets for GSM239408
Status Public on Sep 22, 2008
Title vastus lateralis, protein intake: 0.75 g/kg, young, subject 11
Sample type RNA
 
Source name vastus lateralis, protein intake: 0.75 g/kg, young
Organism Homo sapiens
Characteristics Protein intake: 0.75 g/kg
Trial: P94
Sex: Male
Age: Y (21-43 y)
Treatment protocol Three randomized controlled feeding trials with protein intakes of 63% (P63: 0.50 g/kg-1/d-1), 94% (P94: 0.75 g/kg-1/d-1), and 125% (P125: 1.00 g/kg-1/d-1) of the recommended dietary allowance (RDA).
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from the frozen muscle sample using Tri-Reagent following the manufacturerÆs instructions. Isolated total RNA was further purified using RNeasy Mini Kits following manufacturerÆs protocol
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from a minimum of 5 ug total RNA
 
Hybridization protocol Affymetrix protocol
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner
Description Gene expression for younger male following 2 weeks of dietary protein intake of 0.75 g/kg
Data processing The raw data were summarized using Affymetrix Microarray Suite (MAS) 5.0 software
 
Submission date Oct 24, 2007
Last update date Aug 28, 2018
Contact name Wayne Campbell
E-mail(s) [email protected]
Phone 765-494-8236
Fax 765-494-0674
Organization name Purdue University
Department Foods and Nutrition
Street address 700 West State Street
City West Lafayette
State/province IN
ZIP/Postal code 47907
Country USA
 
Platform ID GPL570
Series (1)
GSE9419 The skeletal muscle transcript profile reflects responses to inadequate protein intake in younger and older males
Relations
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE MAS5.0 signal intensity
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
1007_s_at 223.8 P 0.02786
1053_at 44.7 A 0.081337
117_at 39.2 A 0.098054
121_at 364.5 P 0.009985
1255_g_at 5.1 A 0.824011
1294_at 72.6 A 0.267463
1316_at 45.7 P 0.003585
1320_at 11.7 A 0.765443
1405_i_at 9 A 0.462489
1431_at 39 A 0.204022
1438_at 13 A 0.660442
1487_at 528.8 P 0.008689
1494_f_at 30.2 A 0.32083
1552256_a_at 29.2 A 0.366211
1552257_a_at 95.7 A 0.129639
1552258_at 52.3 P 0.037598
1552261_at 5.1 A 0.533936
1552263_at 19.6 A 0.601074
1552264_a_at 44.5 P 0.01416
1552266_at 31.8 A 0.27417

Total number of rows: 54675

Table truncated, full table size 1406 Kbytes.




Supplementary file Size Download File type/resource
GSM239408.CEL.gz 5.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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