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Sample GSM2417 Query DataSets for GSM2417
Status Public on Mar 11, 2003
Title 10-2
Sample type RNA
 
Source name photosynthetic conditions (10W/m2 white light illumination, no oxygen); no salt stress
Organism Cereibacter sphaeroides 2.4.1
Characteristics strain: 2.4.1
Growth protocol Cells are grown at anoxic photosynthetic (10 W/m2 illumination) conditions without salt stress
Extracted molecule total RNA
Extraction protocol RNA isolated with bead beater + RNeasy kits
Label protocol according to Affymetrix protocol
 
Hybridization protocol according to Affymetrix protocol
Scan protocol according to Affymetrix protocol
Description Rhodobacter sphaeroides 2.4.1, Laramie
 
Submission date Sep 04, 2002
Last update date Jun 02, 2010
Contact name Mark Gomelsky
E-mail(s) [email protected]
Phone 307-766-3522
Organization name University of Wyoming
Department Molecular Biology
Lab Gomelsky
Street address
City Laramie
State/province WY
ZIP/Postal code 82071
Country USA
 
Platform ID GPL162
Series (2)
GSE532 4 growth modes - RNA from Laramie & Houston RNA
GSE8082 Rhodobacter sphaeroides salt stress response

Data table header descriptions
ID_REF
MAS5.0_VALUE relative signal of expression, MAS 5.0 in-chip scaling to 500
DETECTION CALL Present if p<0.04 Absent if p>0.06 Marginal if 0.04 < p < 0.06
VALUE RMA values of expression calculated in context of GSE8082 series

Data table
ID_REF MAS5.0_VALUE DETECTION CALL VALUE
1 19 A 29
2 57.9 A 33
3 18.7 A 22
4 18.2 A 20
5 28.5 A 22
6 2.6 A 20
7 2.9 A 22
8 20.9 A 21
9 4.7 A 23
10 35.6 A 22
11 8.6 A 19
12 2.4 A 20
13 12.6 A 19
14 1.6 A 19
15 1.3 A 19
16 7.3 A 19
17 28.1 A 20
18 23.1 A 22
19 4 A 19
20 1 A 19

Total number of rows: 5355

Table truncated, full table size 83 Kbytes.




Supplementary file Size Download File type/resource
GSM2417.CEL.gz 1.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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