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Sample GSM249872 Query DataSets for GSM249872
Status Public on Mar 01, 2008
Title X44186
Sample type RNA
 
Source name Carcinoma of ovary, fallopian tube or peritonem
Organism Homo sapiens
Characteristics Primary.Site : Ovary
Type : Malignant
Subtype : Ser/PapSer
StageCode : IIIC
Consolidated.Grade : 3
Treatment protocol Frozen tissue stored at -80oC taken after surgery
Extracted molecule total RNA
Extraction protocol Trizol extraction and column chromotogrpahy
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using Affymetrix GS300-7G scanner
Description Gene expression data from human ovarian carcinoma
Data processing The data were analyzed with Gene Chip Operating Software Version 1.4 using Affymetrix default analysis settings. The CEL files generated was later normalized using the RMA method
 
Submission date Dec 14, 2007
Last update date Aug 28, 2018
Contact name Prof David Bowtell PhD.
E-mail(s) [email protected]
Phone +613 96561287
Fax +613 96561414
URL http://www.petermac-research.org.au
Organization name PeterMacCallum Cancer Centre
Department Research Division
Street address Locked Bag 1 A' Beckett St
City Melbourne
State/province VIC
ZIP/Postal code 8006
Country Australia
 
Platform ID GPL570
Series (2)
GSE9891 Expression profile of 285 ovarian tumour samples
GSE9899 Expression profile of ovarian tumour samples
Relations
Reanalyzed by GSE40785
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE RMA normalized signal value

Data table
ID_REF VALUE
AFFX-BioB-5_at 7.43905
AFFX-BioB-M_at 7.98789
AFFX-BioB-3_at 7.41337
AFFX-BioC-5_at 8.60482
AFFX-BioC-3_at 8.71357
AFFX-BioDn-5_at 10.09728
AFFX-BioDn-3_at 11.16396
AFFX-CreX-5_at 12.53974
AFFX-CreX-3_at 12.72032
AFFX-DapX-5_at 9.13062
AFFX-DapX-M_at 11.0162
AFFX-DapX-3_at 11.765
AFFX-LysX-5_at 6.75359
AFFX-LysX-M_at 7.48125
AFFX-LysX-3_at 9.3454
AFFX-PheX-5_at 7.54884
AFFX-PheX-M_at 8.43934
AFFX-PheX-3_at 8.45645
AFFX-ThrX-5_at 7.08752
AFFX-ThrX-M_at 8.53935

Total number of rows: 54621

Table truncated, full table size 999 Kbytes.




Supplementary file Size Download File type/resource
GSM249872.CEL.gz 4.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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