NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM249971 Query DataSets for GSM249971
Status Public on Mar 01, 2008
Title X23070
Sample type RNA
 
Source name Carcinoma of ovary, fallopian tube or peritonem
Organism Homo sapiens
Characteristics Primary.Site : Ovary
Type : Malignant
Subtype : Ser/PapSer
StageCode : IV
Consolidated.Grade : 2
Treatment protocol Frozen tissue stored at -80oC taken after surgery
Extracted molecule total RNA
Extraction protocol Trizol extraction and column chromotogrpahy
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using Affymetrix GS300-7G scanner
Description Gene expression data from human ovarian carcinoma
Data processing The data were analyzed with Gene Chip Operating Software Version 1.4 using Affymetrix default analysis settings. The CEL files generated was later normalized using the RMA method
 
Submission date Dec 14, 2007
Last update date Aug 28, 2018
Contact name Prof David Bowtell PhD.
E-mail(s) [email protected]
Phone +613 96561287
Fax +613 96561414
URL http://www.petermac-research.org.au
Organization name PeterMacCallum Cancer Centre
Department Research Division
Street address Locked Bag 1 A' Beckett St
City Melbourne
State/province VIC
ZIP/Postal code 8006
Country Australia
 
Platform ID GPL570
Series (2)
GSE9891 Expression profile of 285 ovarian tumour samples
GSE9899 Expression profile of ovarian tumour samples
Relations
Reanalyzed by GSE40785
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE RMA normalized signal value

Data table
ID_REF VALUE
AFFX-BioB-5_at 8.26252
AFFX-BioB-M_at 8.84912
AFFX-BioB-3_at 8.18625
AFFX-BioC-5_at 9.48281
AFFX-BioC-3_at 9.34381
AFFX-BioDn-5_at 9.81203
AFFX-BioDn-3_at 12.12647
AFFX-CreX-5_at 12.80605
AFFX-CreX-3_at 13.05059
AFFX-DapX-5_at 9.04037
AFFX-DapX-M_at 10.20322
AFFX-DapX-3_at 10.7183
AFFX-LysX-5_at 5.16482
AFFX-LysX-M_at 5.94875
AFFX-LysX-3_at 8.05696
AFFX-PheX-5_at 7.18211
AFFX-PheX-M_at 7.46877
AFFX-PheX-3_at 7.5382
AFFX-ThrX-5_at 7.38773
AFFX-ThrX-M_at 7.85197

Total number of rows: 54621

Table truncated, full table size 999 Kbytes.




Supplementary file Size Download File type/resource
GSM249971.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap