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Sample GSM25296

Query DataSets for GSM25296

Status

Public on Jun 17, 2004

Title

10B

Sample type

RNA

Source name

Rhodobacter sphaeroides 2.4.1

Organism

Cereibacter sphaeroides

Extracted molecule

total RNA

Description

Growth at 10% O2, 1% CO2, 89% N2 in the dark. Cells were collected at OD(600)=0.18. RNA was isolated with bead beater + RNeasy kits with DNase treatment. Expression values were generated using MAS5.0 (scaled to target=500). Probe intensity (.CEL) files are available upon request

Submission date

Jun 15, 2004

Last update date

May 27, 2005

Contact name

Mark Gomelsky

E-mail(s)

[email protected]

Phone

307-766-3522

Organization name

University of Wyoming

Department

Molecular Biology

Lab

Gomelsky

Street address

City

Laramie

State/province

ZIP/Postal code

82071

Country

USA

Platform ID

GPL162

Series (2)

GSE1480	Responses of the Rhodobacter sphaeroides Transcriptome to Blue Light
GSE7004	Oxygen-dependent transcriptome profiling in R.sphaeroides 2.4.1 in the dark

Data table header descriptions
ID_REF
VALUE	relative signal of expression
ABS_CALL	Present if p<0.04 Absent if p>0.06 Marginal if 0.04 < p < 0.06
DETECTION P-VALUE	stat. significance of detection
Stat Pairs	pairs of PM-MM present on chip
Stat Pairs Used	pairs of PM-MM used in analysis

Data table
ID_REF	VALUE	ABS_CALL	DETECTION P-VALUE	Stat Pairs	Stat Pairs Used
1	17.1	A	0.48748	14	14
2	32.6	A	0.198363	14	14
3	507.6	P	0.000066	20	19
4	248.6	P	0.000044	20	20
5	572.5	P	0.000052	20	20
6	961	P	0.000044	20	20
7	2268.8	P	0.000052	20	20
8	2963.6	P	0.000044	20	20
9	975.2	P	0.000066	20	19
10	6546.8	P	0.000044	20	20
11	7315.8	P	0.000066	20	19
12	1.7	A	0.227636	20	20
13	4.1	P	0.032075	20	19
14	0.1	A	0.870082	20	19
15	3.6	A	0.147712	20	19
16	0.1	A	0.691754	20	18
17	6.1	A	0.078002	20	20
18	1.3	A	0.760937	20	20
19	0.2	A	0.950521	20	19
20	0.4	A	0.900558	20	18

Total number of rows: 5355

Table truncated, full table size 143 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM25296.CEL.gz	1.2 Mb	(ftp)(http)	CEL