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Sample GSM253193 Query DataSets for GSM253193
Status Public on May 28, 2008
Title RGA-GR-MOCK-REP1
Sample type RNA
 
Source name Arabidopsis inflorescence without flowers later than stage 12, mock treated, 4h
Organism Arabidopsis thaliana
Characteristics Ecotype Lansberg erecta
Extracted molecule total RNA
Extraction protocol Total RNAs were extracted by using RNeasy Plant Mini Kit (Qiagen)
Label biotin
Label protocol According to the manufacturer's instructions (Affymetrix, Santa Clara, California, USA)
 
Hybridization protocol According to the manufacturer's instructions (Affymetrix, Santa Clara, California, USA)
Scan protocol According to the manufacturer's instructions (Affymetrix, Santa Clara, California, USA)
Description N/A
Data processing GeneChip® Scanner was used to scan the probe arrays and signals were obtained by GeneChip® Operating Software (GCOS). The GCOS generated data files (.CEL file) were imported into GeneSpring GX 7.3.1 (Agilent) to do further analysis.
 
Submission date Dec 24, 2007
Last update date Aug 28, 2018
Contact name Hao Yu
E-mail(s) [email protected]
Phone 65-65163048
Fax 65-67792486
Organization name National University of Singapore
Department Biological Sciences
Lab Plant Functional Genomics Lab
Street address Lower Kent Ridge Road
City Singapore
ZIP/Postal code 117543
Country Singapore
 
Platform ID GPL198
Series (1)
GSE10019 Identification of RGA downstream genes by using steroid-inducible system
Relations
Reanalyzed by GSE119083

Data table header descriptions
ID_REF
VALUE GCOS calculated signal intensity
ABS_CALL The call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE p-value indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
244901_at 0.251 P 0.417
244902_at 0.404 A 0.532
244903_at 0.317 P 0.33
244904_at 0.779 A 0.827
244905_at 0.144 A 0.494
244906_at 0.33 A 0.403
244907_at 0.759 A 0.813
244908_at 0.097 A 0.466
244909_at 0.0595 A 0.437
244910_s_at 0.0763 A 0.451
244911_at 0.0511 A 0.43
244912_at 0.0507 A 0.322
244913_at 0.138 A 0.491
244914_at 0.0535 A 0.432
244915_s_at 0.717 A 0.785
244916_at 0.108 A 0.473
244917_at 0.0544 A 0.433
244918_at 0.185 A 0.515
244919_at 0.303 A 0.57
244920_s_at 0.207 P 0.328

Total number of rows: 22810

Table truncated, full table size 519 Kbytes.




Supplementary file Size Download File type/resource
GSM253193.CEL.gz 3.0 Mb (ftp)(http) CEL
GSM253193.CHP.gz 5.6 Mb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file
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