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Sample GSM253196 Query DataSets for GSM253196
Status Public on May 28, 2008
Title RGA-GR-DEX-REP2
Sample type RNA
 
Source name Arabidopsis inflorescence without flowers later than stage 12, dexamethasone treated, 4h
Organism Arabidopsis thaliana
Characteristics Ecotype Lansberg erecta
Extracted molecule total RNA
Extraction protocol Total RNAs were extracted by using RNeasy Plant Mini Kit (Qiagen)
Label biotin
Label protocol According to the manufacturer's instructions (Affymetrix, Santa Clara, California, USA)
 
Hybridization protocol According to the manufacturer's instructions (Affymetrix, Santa Clara, California, USA)
Scan protocol According to the manufacturer's instructions (Affymetrix, Santa Clara, California, USA)
Description N/A
Data processing GeneChip® Scanner was used to scan the probe arrays and signals were obtained by GeneChip® Operating Software (GCOS). The GCOS generated data files (.CEL file) were imported into GeneSpring GX 7.3.1 (Agilent) to do further analysis.
 
Submission date Dec 24, 2007
Last update date Aug 28, 2018
Contact name Hao Yu
E-mail(s) [email protected]
Phone 65-65163048
Fax 65-67792486
Organization name National University of Singapore
Department Biological Sciences
Lab Plant Functional Genomics Lab
Street address Lower Kent Ridge Road
City Singapore
ZIP/Postal code 117543
Country Singapore
 
Platform ID GPL198
Series (1)
GSE10019 Identification of RGA downstream genes by using steroid-inducible system
Relations
Reanalyzed by GSE119083

Data table header descriptions
ID_REF
VALUE GCOS calculated signal intensity
ABS_CALL The call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE p-value indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
244901_at 1.268 P 0.613
244902_at 1.82 P 0.313
244903_at 0.858 P 0.758
244904_at 1.039 A 0.968
244905_at 0.124 A 0.487
244906_at 0.849 P 0.782
244907_at 0.74 A 0.808
244908_at 0.216 A 0.536
244909_at 0.089 A 0.465
244910_s_at 0.413 A 0.628
244911_at 0.115 A 0.482
244912_at 0.253 P 0.391
244913_at 0.0486 A 0.43
244914_at 0.163 A 0.509
244915_s_at 0.262 A 0.558
244916_at 0.647 A 0.75
244917_at 0.112 A 0.48
244918_at 0.422 A 0.632
244919_at 0.879 A 0.905
244920_s_at 0.427 P 0.438

Total number of rows: 22810

Table truncated, full table size 525 Kbytes.




Supplementary file Size Download File type/resource
GSM253196.CEL.gz 3.0 Mb (ftp)(http) CEL
GSM253196.CHP.gz 5.6 Mb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file
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