NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM25442 Query DataSets for GSM25442
Status Public on Aug 12, 2004
Title GM10840_rep1
Sample type RNA
 
Source name Lymphoblastoid cell line
Organism Homo sapiens
Characteristics Coriell cell line repository identifier: GM10840
http://locus.umdnj.edu/nigms/nigms_cgi/display.cgi?GM10840


Biomaterial provider Coriell Cell Repositories

Coriell
Extracted molecule total RNA
 
Description Sample description = RNA was extracted from lymphoblastoid cells of members of the CEPH Utah pedigrees. The cells were grown at a density of 5 x 105 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber. RNA samples were processed and hybridized onto the Affymetrix Human Focus Arrays according to the manufacturer’s suggestion. Arrays were scanned and analyzed using MAS 5.0 software (Affymetrix).
 
Submission date Jun 17, 2004
Last update date Nov 30, 2005
Contact name Michael Patrick Morley
E-mail(s) [email protected]
Phone 215-898-2026
Organization name Perelman School of Medicine at the University of Pennsylvania
Department Penn Cardiovascular Institute
Street address 3400 Civic Center Blvd, Bldg 421
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL201
Series (1)
GSE1485 Natural variation in human gene expression

Data table header descriptions
ID_REF
VALUE 'signal' a measure of the abundance of a transcript
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
ID_REF VALUE ABS_CALL
1007_s_at 240.2 P
1053_at 496.3 P
117_at 112.3 P
121_at 572 P
1255_g_at 4.4 A
1294_at 301.5 P
1316_at 65 A
1320_at 37.9 A
1431_at 19.9 A
1438_at 8.9 A
1487_at 355.4 P
1494_f_at 77.6 A
1598_g_at 181.7 A
160020_at 110 P
1729_at 391.6 P
1773_at 116.2 A
177_at 158.5 P
1861_at 165.4 P
200000_s_at 2149.2 P
200001_at 2525.3 P

Total number of rows: 8793

Table truncated, full table size 156 Kbytes.




Supplementary file Size Download File type/resource
GSM25442.CEL.gz 1.3 Mb (ftp)(http) CEL

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap