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Sample GSM26242

Query DataSets for GSM26242

Status

Public on Jul 03, 2004

Title

20A

Sample type

RNA

Source name

Rhodobacter sphaeroides 2.4.1

Organism

Cereibacter sphaeroides

Extracted molecule

total RNA

Description

Growth at 20% O2, 1% CO2, 79% N2 in the dark. Cells are collected at OD 0.18. RNA was isolated with bead beater + RNeasy kits
Sample_series_id: GSE1515

Submission date

Jun 28, 2004

Last update date

May 27, 2005

Contact name

Mark Gomelsky

E-mail(s)

[email protected]

Phone

307-766-3522

Organization name

University of Wyoming

Department

Molecular Biology

Lab

Gomelsky

Street address

City

Laramie

State/province

ZIP/Postal code

82071

Country

USA

Platform ID

GPL162

Series (2)

GSE1515	PpsR regulon in Rhodobacter sphaeroides
GSE7004	Oxygen-dependent transcriptome profiling in R.sphaeroides 2.4.1 in the dark

Data table header descriptions
ID_REF
VALUE	relative signal of expression
ABS_CALL	Present if p<0.04 Absent if p>0.06 Marginal if 0.04 < p < 0.06
DETECTION P-VALUE	stat. significance of detection
Stat Pairs	pairs of PM-MM present on chip
Stat Pairs Used	pairs of PM-MM used in analysis

Data table
ID_REF	VALUE	ABS_CALL	DETECTION P-VALUE	Stat Pairs	Stat Pairs Used
1	26.3	A	0.276247	14	13
2	21.2	A	0.296809	14	14
3	477.7	P	0.000095	20	20
4	397.4	P	0.000125	20	19
5	528.8	P	0.000066	20	19
6	934.3	P	0.000044	20	20
7	2240.9	P	0.000052	20	20
8	3132.9	P	0.000044	20	20
9	836	P	0.000044	20	20
10	6903	P	0.000052	20	20
11	5879	P	0.000044	20	20
12	2.2	A	0.548046	20	19
13	3.9	A	0.079495	20	19
14	0.3	A	0.715285	20	16
15	0.2	A	0.611441	20	18
16	0.1	A	0.836457	20	18
17	4.3	A	0.277017	20	17
18	1.4	A	0.936893	20	19
19	0.7	A	0.595398	20	19
20	0.7	A	0.611441	20	18

Total number of rows: 5355

Table truncated, full table size 143 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM26242.CEL.gz	1.2 Mb	(ftp)(http)	CEL