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Sample GSM266724 Query DataSets for GSM266724
Status Public on Mar 05, 2008
Title S. cerevisiae Ptero_Control_B
Sample type RNA
 
Source name S. cerevisiae Strain S288C cells treated with solvent (0.25% DMSO)
Organism Saccharomyces cerevisiae
Characteristics S. cerevisiae S288C cells at OD 0.2 were treated with solvent (0.25% DMSO), allowed to grow to OD 0.5, then harvested and frozen. Three biological replicate samples were generated.
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy Midi-kit
Label Biotin
Label protocol Affymetrix One Cycle Target Labeling Kit
 
Hybridization protocol Affymetrix GeneChip Hybridization protocol, and GeneChip Fluidics Station 450 default protocol
Scan protocol Affymetrix GeneChip Scanner 3000 default parameters
Description S. cerevisiae Ptero_Control_B
Data processing Image analysis, scaling (TGT = 500), and probeset-level data analysis using default parameters in GCOS v1.1
 
Submission date Feb 18, 2008
Last update date Feb 19, 2008
Contact name Ameeta Agarwal
E-mail(s) [email protected]
Phone 662-915-1218
Organization name University of Mississippi
Department National Center for Natural Products Research
Street address NCNPR, Room 2049
City University
State/province MS
ZIP/Postal code 38677
Country USA
 
Platform ID GPL90
Series (1)
GSE10554 Identification of Molecular Pathways Affected by Pterostilbene, a Natural Dimethylether Analog of Resveratrol

Data table header descriptions
ID_REF
VALUE Normalized signal intensity
ABS_CALL Present (P), absent (A), marginal (M) call

Data table
ID_REF VALUE ABS_CALL
AFFX-MurIL2_at 2.3 A
AFFX-MurIL10_at 2.4 A
AFFX-MurIL4_at 1.9 A
AFFX-MurFAS_at 6.4 A
AFFX-BioB-5_at 104.9 P
AFFX-BioB-M_at 146.9 P
AFFX-BioB-3_at 134.3 P
AFFX-BioC-5_at 243.6 P
AFFX-BioC-3_at 296.2 P
AFFX-BioDn-5_at 521.1 P
AFFX-BioDn-3_at 1864.8 P
AFFX-CreX-5_at 3259.8 P
AFFX-CreX-3_at 4278.3 P
AFFX-BioB-5_st 2.6 A
AFFX-BioB-M_st 2.2 A
AFFX-BioB-3_st 2.5 A
AFFX-BioC-5_st 4.8 A
AFFX-BioC-3_st 2.1 A
AFFX-BioDn-5_st 10.8 A
AFFX-BioDn-3_st 32 A

Total number of rows: 9335

Table truncated, full table size 145 Kbytes.




Supplementary file Size Download File type/resource
GSM266724.CEL.gz 1.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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