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Sample GSM26940 Query DataSets for GSM26940
Status Public on Jul 15, 2005
Title K14deltaNB-cateninER Time 1 replicate 2
Sample type RNA
 
Source name Total skin
Organism Mus musculus
Extracted molecule total RNA
 
Description Total RNA was isolated from D2 K14deltaNB-cateninER transgenic mice treated for 1 day with 4-hydroxytamoxifen (4OHT; Sigma) using Trizol reagent (Gibco BRL). Double stranded cDNA was generated from 10 ug total RNA and used to generate biotinylated cRNA using the Enzo BioArray High Yield Transcription Labelling Kit (Affymetrix). The cRNA was fragmented using the GeneChip Sample Cleanup Module (Affymetrix) and 10 ug were hybridized to GeneChip Mouse Expression Set 430 A oligonucleotide arrays (Affymetrix). Hybridizations were performed according to the manufacturers instructions using an Affymetrix Gene Chip Instrument System. The arrays were scanned on an Affymetrix GeneChip scanner.
Keywords = Mouse
Keywords = Affymetrix
Keywords = Skin
Keywords = Hair
Keywords = Epidermis
Keywords = Keratinocyte
Keywords = B-catenin
Keywords = Stem Cell
 
Submission date Jul 15, 2004
Last update date May 28, 2005
Contact name Fiona M Watt
E-mail(s) [email protected]
Phone 020 7242 0200 3527
Organization name Cancer Research UK
Department Keratinocyte
Lab Fiona Watt Lab
Street address 44 Lincolns Inn Fields
City London
ZIP/Postal code E3 5NZ
Country United Kingdom
 
Platform ID GPL339
Series (1)
GSE1579 Conditional activation of B-catenin in adult mouse epidermis for 0, 1, or 7 days

Data table header descriptions
ID_REF
VALUE MAS 5 intensity signal
ABS_CALL an absolute call indicating if a transcript is detected (P, present), undetected (A, absent) or at the limits of detection (M, marginal)
DETECTION P-VALUE The p-value provides an indication as to the significanse of the ABS_CALL

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 131.4 P 0.004017
AFFX-BioB-M_at 239.1 P 0.000446
AFFX-BioB-3_at 123.5 P 0.000662
AFFX-BioC-5_at 483.3 P 0.000095
AFFX-BioC-3_at 354.4 P 0.000052
AFFX-BioDn-5_at 390.5 P 0.000044
AFFX-BioDn-3_at 2542.1 P 0.000095
AFFX-CreX-5_at 3824 P 0.000044
AFFX-CreX-3_at 7230.6 P 0.000044
AFFX-DapX-5_at 17.1 A 0.108979
AFFX-DapX-M_at 13.9 A 0.440646
AFFX-DapX-3_at 2.9 A 0.891021
AFFX-LysX-5_at 1.1 A 0.913521
AFFX-LysX-M_at 5.4 A 0.672921
AFFX-LysX-3_at 9.1 A 0.175328
AFFX-PheX-5_at 0.9 A 0.960339
AFFX-PheX-M_at 1.2 A 0.9273
AFFX-PheX-3_at 9.3 A 0.544587
AFFX-ThrX-5_at 2.8 A 0.9273
AFFX-ThrX-M_at 18.1 A 0.175328

Total number of rows: 22690

Table truncated, full table size 620 Kbytes.




Supplementary data files not provided

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