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Sample GSM272346 Query DataSets for GSM272346
Status Public on Apr 10, 2008
Title wt_HPC, biological replicate 1
Sample type RNA
 
Source name hippocampus
Organism Mus musculus
Characteristics C57BL/6, Gender: male, Age: 8 weeks,
Treatment protocol none
Growth protocol 8 weeks old male littemate mice
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA were performed according to the manufacturer's instructions. As a last step of the extraction procedure, the RNA was purified with the RNeasy Mini-kit (Qiagen).
Label biotin
Label protocol According to Affymetrix Standard Protocols
 
Hybridization protocol According to Affymetrix Standard Protocols
Scan protocol According to Affymetrix Standard Protocols
Description Gene expression data from wt mouse hippocampus
Data processing The CEL files were analyzed with ArrayAssist (version 5.0, Stratagene Inc). The raw intensity data of all PFC samples or HPC samples were first GCRMA normalized and log2 transformed. T-test with FDR correction were then conducted for differential expression analysis.
 
Submission date Mar 11, 2008
Last update date Aug 28, 2018
Contact name Joseph Gogos
Organization name Columbia University
Department Physiology
Street address 630 W 168 st P&S 11-519
City New York
State/province NY
ZIP/Postal code 10032
Country USA
 
Platform ID GPL1261
Series (1)
GSE10784 Gene profile data from Df(16)A/+ and wild type littermates
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE GCRMA normalized, log2 transformed signal intensity

Data table
ID_REF VALUE
1415670_at 10.557621
1415671_at 11.934707
1415672_at 11.8133
1415673_at 9.102424
1415674_a_at 9.040487
1415675_at 8.649214
1415676_a_at 11.560601
1415677_at 10.103308
1415678_at 10.490868
1415679_at 10.394345
1415680_at 8.150058
1415681_at 8.582296
1415682_at 9.072901
1415683_at 10.267801
1415684_at 8.66819
1415685_at 8.443899
1415686_at 11.640387
1415687_a_at 13.096943
1415688_at 10.280759
1415689_s_at 8.360814

Total number of rows: 45101

Table truncated, full table size 924 Kbytes.




Supplementary file Size Download File type/resource
GSM272346.CEL.gz 6.3 Mb (ftp)(http) CEL
GSM272346.EXP.gz 366 b (ftp)(http) EXP
Processed data included within Sample table

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