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Sample GSM27352

Query DataSets for GSM27352

Status

Public on Jul 27, 2004

Title

PPS2-4C

Sample type

RNA

Source name

Rhodobacter sphaeroides PPS2-4

Organism

Cereibacter sphaeroides

Extracted molecule

total RNA

Description

PPS2-4 strain was derived from R.sphaeroides 2.4.1. It has two point mutations in the chromosomal ppsR gene resulting in amino acid substitutions C251->S and C424->S. Growth at 20% O2, 1% CO2, 79% N2 in the dark. Cells are collected at OD 0.18. RNA was isolated with bead beater + RNeasy kits

Submission date

Jul 23, 2004

Last update date

Sep 08, 2005

Contact name

Mark Gomelsky

E-mail(s)

[email protected]

Phone

307-766-3522

Organization name

University of Wyoming

Department

Molecular Biology

Lab

Gomelsky

Street address

City

Laramie

State/province

ZIP/Postal code

82071

Country

USA

Platform ID

GPL162

Series (1)

GSE1515

PpsR regulon in Rhodobacter sphaeroides

Data table header descriptions
ID_REF
VALUE	relative signal of expression
ABS_CALL	Present if p<0.04 Absent if p>0.06 Marginal if 0.04 < p < 0.06
DETECTION P-VALUE	stat. significance of detection
Stat Pairs	pairs of PM-MM present on chip
Stat Pairs Used	pairs of PM-MM used in analysis

Data table
ID_REF	VALUE	ABS_CALL	DETECTION P-VALUE	Stat Pairs	Stat Pairs Used
1	15.6	A	0.364945	14	14
2	5.8	A	0.586954	14	14
3	4	A	0.891021	20	20
4	12.7	A	0.147939	20	20
5	0.9	A	0.897835	20	20
6	1	A	0.760937	20	20
7	1.5	A	0.783476	20	20
8	3	A	0.559354	20	20
9	1.2	A	0.804734	20	20
10	2.1	A	0.843268	20	20
11	2.3	A	0.794288	20	20
12	0.3	A	0.989683	20	20
13	3	A	0.216524	20	20
14	0.3	A	0.99238	20	20
15	0.3	A	0.921998	20	20
16	0.1	A	0.749204	20	20
17	1.8	A	0.5	20	20
18	1.8	A	0.852061	20	20
19	3.6	A	0.095667	20	20
20	0.2	A	0.999029	20	20

Total number of rows: 5355

Table truncated, full table size 142 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM27352.CEL.gz	1.1 Mb	(ftp)(http)	CEL