|
| Status |
Public on Sep 01, 2017 |
| Title |
MI-1 |
| Sample type |
SRA |
| |
|
| Source name |
Metaphase I stage oocyte
|
| Organism |
Macaca mulatta |
| Characteristics |
sample type: single oocyte
source: Collected post-mortem from superovulated donor
Stage: Metaphase I stage
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Whole cell lysate
Clonetech SMARTer Ultra Low Input RNA kit for Illumina Sequencing
Illumina TruSeq DNA library preparation kit
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2000 |
| |
|
| Description |
Processed file_RPKM_all_samples.csv
|
| Data processing |
Filtering for quality (q>0.05) and trimmed off 10 bp from 5" end using CLC Genomics Workbench Ver. 6.0.2
RNA-Seq analysis using CLC Genomics Workbench Ver. 6.0.2
RhesusBase gene annotation
Genome_build: Mmul_8.0.1
Supplementary_files_format_and_content: Processed file_RPKM_all_samples.csv contains RPKM in comma separated value format (.csv)
|
| |
|
| Submission date |
Aug 30, 2017 |
| Last update date |
May 15, 2019 |
| Contact name |
Pablo Juan Ross |
| E-mail(s) |
[email protected]
|
| Phone |
5307717225
|
| Organization name |
University of California Davis
|
| Department |
Animal Science
|
| Lab |
Ross
|
| Street address |
1 Shields Ave, 2239 Meyer Hall
|
| City |
Davis |
| State/province |
CA |
| ZIP/Postal code |
95616 |
| Country |
USA |
| |
|
| Platform ID |
GPL14954 |
| Series (1) |
| GSE103313 |
Transcriptome profiling of individual rhesus macaque oocytes and preimplantation embryos |
|
| Relations |
| BioSample |
SAMN07573795 |
| SRA |
SRX3146774 |
