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Sample GSM277494 Query DataSets for GSM277494
Status Public on Dec 22, 2008
Title Synchronous liver metastasis colorectal CA 15
Sample type RNA
 
Source name Synchronous liver metastasis from colorectal cancer_sample S15
Organism Homo sapiens
Characteristics Tissue: liver metastasis; Tumor: colorectal carcinoma. Status: Synchronous metastasis
Biomaterial provider Prof. Guido Biasco. Institute of Hematology and Medical Oncology "L. & A. Seragnoli", Bologna, Italy.
Extracted molecule total RNA
Extraction protocol Trizol reagent on frozen, pulverized tissue specimen
Label biotin
Label protocol Affymetrix one-cycle labeling protocol (Expression_analysis_technical_manual)
 
Hybridization protocol According to Affymetrix Expression_analysis_technical_manual
Scan protocol Affymetrix scanner 7G. GCOS 1.4 acquisition software
Description null
Data processing MAS5.0 Signal and Detection algorithm. Scaling to 500.
 
Submission date Mar 26, 2008
Last update date Aug 28, 2018
Contact name Maria Abbondanza Pantaleo
E-mail(s) [email protected]
Organization name Policlinico S. Orsola-Malpighi, University of Bologna
Department Institute of Hematology and Medical Oncology "L.A.Seragnoli"
Street address via Massarenti 9
City Bologna
State/province BO
ZIP/Postal code 40138
Country Italy
 
Platform ID GPL570
Series (1)
GSE10961 Gene expression profiling of liver metastases from colorectal cancer
Relations
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE Signal, scaled to 500
ABS_CALL Detection
DETECTION P-VALUE P value of detection

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 876.277 P 0.000146581
AFFX-BioB-M_at 1385.97 P 4.42873e-05
AFFX-BioB-3_at 796.535 P 4.42873e-05
AFFX-BioC-5_at 2645.78 P 5.16732e-05
AFFX-BioC-3_at 3395.08 P 5.16732e-05
AFFX-BioDn-5_at 7730 P 4.42873e-05
AFFX-BioDn-3_at 11574.3 P 4.42873e-05
AFFX-CreX-5_at 35497.2 P 5.16732e-05
AFFX-CreX-3_at 37632.5 P 4.42873e-05
AFFX-DapX-5_at 24.4558 A 0.340648
AFFX-DapX-M_at 364.453 P 0.00179591
AFFX-DapX-3_at 2126.74 P 5.16732e-05
AFFX-LysX-5_at 4.05461 A 0.804734
AFFX-LysX-M_at 72.2185 A 0.0780018
AFFX-LysX-3_at 600.933 P 4.42873e-05
AFFX-PheX-5_at 14.1106 A 0.617411
AFFX-PheX-M_at 24.8189 A 0.287743
AFFX-PheX-3_at 290.091 P 0.000856509
AFFX-ThrX-5_at 3.33412 A 0.979978
AFFX-ThrX-M_at 27.6683 A 0.300606

Total number of rows: 54675

Table truncated, full table size 1639 Kbytes.




Supplementary file Size Download File type/resource
GSM277494.CEL.gz 7.9 Mb (ftp)(http) CEL
GSM277494.CHP.gz 13.1 Mb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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