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Sample GSM277648 Query DataSets for GSM277648
Status Public on Dec 22, 2008
Title Synchronous liver metastasis colorectal CA 19
Sample type RNA
 
Source name Synchronous liver metastasis from colorectal cancer_sample S19
Organism Homo sapiens
Characteristics Tissue: liver metastasis; Tumor: colorectal carcinoma. Status: Synchronous metastasis
Biomaterial provider Prof. Guido Biasco. Institute of Hematology and Medical Oncology "L. & A. Seragnoli", Bologna, Italy.
Extracted molecule total RNA
Extraction protocol Trizol reagent on frozen, pulverized tissue specimen
Label biotin
Label protocol Affymetrix one-cycle labeling protocol (Expression_analysis_technical_manual)
 
Hybridization protocol According to Affymetrix Expression_analysis_technical_manual
Scan protocol Affymetrix scanner 7G. GCOS 1.4 acquisition software
Description null
Data processing MAS5.0 Signal and Detection algorithm. Scaling to 500.
 
Submission date Mar 27, 2008
Last update date Aug 28, 2018
Contact name Maria Abbondanza Pantaleo
E-mail(s) maria.pantaleo@unibo.it
Organization name Policlinico S. Orsola-Malpighi, University of Bologna
Department Institute of Hematology and Medical Oncology "L.A.Seragnoli"
Street address via Massarenti 9
City Bologna
State/province BO
ZIP/Postal code 40138
Country Italy
 
Platform ID GPL570
Series (1)
GSE10961 Gene expression profiling of liver metastases from colorectal cancer
Relations
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE Signal, scaled to 500
ABS_CALL Detection
DETECTION P-VALUE P value of detection

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1208.48 P 0.000195116
AFFX-BioB-M_at 1981.87 P 4.42873e-05
AFFX-BioB-3_at 1269.99 P 4.42873e-05
AFFX-BioC-5_at 3785.06 P 5.16732e-05
AFFX-BioC-3_at 5328.82 P 4.42873e-05
AFFX-BioDn-5_at 13048.5 P 4.42873e-05
AFFX-BioDn-3_at 18384.7 P 4.42873e-05
AFFX-CreX-5_at 59745.9 P 5.16732e-05
AFFX-CreX-3_at 69487.5 P 4.42873e-05
AFFX-DapX-5_at 39.3632 A 0.470238
AFFX-DapX-M_at 388.178 P 0.00359458
AFFX-DapX-3_at 1571.99 P 6.02111e-05
AFFX-LysX-5_at 6.23534 A 0.760976
AFFX-LysX-M_at 83.5671 A 0.216524
AFFX-LysX-3_at 610.264 P 0.000146402
AFFX-PheX-5_at 39.5014 A 0.250796
AFFX-PheX-M_at 101.476 A 0.0956669
AFFX-PheX-3_at 170.203 P 0.00618711
AFFX-ThrX-5_at 11.6224 A 0.804734
AFFX-ThrX-M_at 46.7224 A 0.287726

Total number of rows: 54675

Table truncated, full table size 1630 Kbytes.




Supplementary file Size Download File type/resource
GSM277648.CEL.gz 7.6 Mb (ftp)(http) CEL
GSM277648.CHP.gz 12.8 Mb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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