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Sample GSM283124 Query DataSets for GSM283124
Status Public on Nov 17, 2008
Title yw 1-2 hr 3
Sample type RNA
 
Source name wild type, 1 to 2 hr embryo
Organism Drosophila melanogaster
Characteristics wild type, 1 to 2 hr embryo
Extracted molecule total RNA
Extraction protocol 1-2 hr embryonic total RNA samples were extracted form duplicate collections of yw and zld-glc embryos by TRIzol (invitrogen).
Label Biotin
Label protocol cDNA was prepared by GeneChip® HT One-Cycle cDNA Synthesis Kit (Manufactured by Invitrogen for Affymetrix) and labeled by BioArray™ HighYield™ RNA Transcript Labeling Kit (Enzo).
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description wild type, 1 to 2 hr embryo
Data processing standard Affymetrix procedures
 
Submission date Apr 21, 2008
Last update date Aug 28, 2018
Contact name Christine Rushlow
Organization name NYU
Department Biology
Street address 100 Washington Sq.E.
City New York
State/province NY
ZIP/Postal code 10003
Country USA
 
Platform ID GPL1322
Series (1)
GSE11231 The zinc finger protein Zelda plays a key role in the maternal to zygotic transition in Drosophila
Relations
Reanalyzed by GSE119084

Data table header descriptions
ID_REF
VALUE GCOS-calculated Signal intensity
ABS_CALL an absolute analysis that indicates if the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE detection p-value indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 59.8 P 0.018281
AFFX-BioB-M_at 43.6 P 0.000754
AFFX-BioB-3_at 20.5 A 0.300606
AFFX-BioC-5_at 94.7 P 0.00141
AFFX-BioC-3_at 73.6 P 0.002023
AFFX-BioDn-5_at 247.9 P 0.00006
AFFX-BioDn-3_at 627.4 P 0.000857
AFFX-CreX-5_at 1394.5 P 0.000081
AFFX-CreX-3_at 1290 P 0.000044
AFFX-DapX-5_at 1.3 A 0.574038
AFFX-DapX-M_at 6.5 A 0.455413
AFFX-DapX-3_at 4.3 A 0.659339
AFFX-LysX-5_at 6.2 A 0.123552
AFFX-LysX-M_at 11.6 A 0.659339
AFFX-LysX-3_at 10.1 P 0.01667
AFFX-PheX-5_at 0.7 A 0.937071
AFFX-PheX-M_at 1.5 A 0.814869
AFFX-PheX-3_at 16 A 0.39692
AFFX-ThrX-5_at 15.7 A 0.185131
AFFX-ThrX-M_at 4.7 A 0.48511

Total number of rows: 18952

Table truncated, full table size 503 Kbytes.




Supplementary file Size Download File type/resource
GSM283124.CEL.gz 2.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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