|
| Status |
Public on Feb 08, 2018 |
| Title |
Sample 7_Arabidopsis csn5b-1 2day seeds |
| Sample type |
SRA |
| |
|
| Source name |
Arabidopsis csn5b-1 2day seeds
|
| Organism |
Arabidopsis thaliana |
| Characteristics |
ecotype background: Col-0
genotype/variation: csn5b-1
tissue: 2-day germinating seeds
|
| Treatment protocol |
No treatment
|
| Growth protocol |
Ripened seeds (8-weeks) of Col-0, csn5a-1, and csn1-10 that were collected on the same day from plants grown side-by-side at the same time were used. The 2-day germinating seeds, prepared with the same volume of dry seeds as above, were sterilized and incubate on cell culture wells with 0.5X liquid GM medium at 22oC under constant light for 2 days.
|
| Extracted molecule |
polyA RNA |
| Extraction protocol |
RNAeasy Kit
stander Illumina mRNA-seq protocol
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2000 |
| |
|
| Description |
Sample_2D5b-1_006
|
| Data processing |
Bowtie for alignment, v1, default parameter
Cufflink for expression profiling, v2.1.0, default paremeter
Genome_build: TAIR10
Supplementary_files_format_and_content: "cuffdiff" output text file containing the normalized value and fold-changes
|
| |
|
| Submission date |
Oct 26, 2017 |
| Last update date |
May 15, 2019 |
| Contact name |
Bosheng Li |
| E-mail(s) |
[email protected]
|
| Organization name |
SUSTC (current, may different with previous institution )
|
| Department |
MCDB
|
| Street address |
SUStech Huiyuan #1 406
|
| City |
Shenzhen |
| State/province |
Guangdong |
| ZIP/Postal code |
581055 |
| Country |
China |
| |
|
| Platform ID |
GPL13222 |
| Series (1) |
| GSE106223 |
The COP9 Signalosome regulates seed germination by facilitating protein degradation of RGL2 and ABI5 |
|
| Relations |
| BioSample |
SAMN07838716 |
| SRA |
SRX3331756 |
