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Sample GSM2858 Query DataSets for GSM2858
Status Public on Dec 06, 2002
Title H9LMS00121802
Sample type RNA
 
Source name spleen
Organism Homo sapiens
Extracted molecule total RNA
 
Description Large-scale analysis of the human transcriptome.
Spleen
Source: Clontech, http://www.clontech.com/archive/OCT01UPD/pdf/PremiumRNA.pdf
Analyzed using the Affymetrix MAS4 algorithm.
Background: Avg: 109.21 Stdv: 5.08 Min: 99.51 Max: 116.91
 
Submission date Nov 22, 2002
Last update date May 27, 2005
Contact name John R Walker
E-mail(s) [email protected]
Phone 858-812-1636
Organization name Genomics Institute of the Novartis Research Foundation
Lab Genetics Core
Street address 10675 John Jay Hopkins
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL91
Series (1)
GSE96 Large-scale analysis of the human transcriptome

Data table header descriptions
ID_REF Affymetrix Probe Set Identifier
Positive Number of positive probe pairs
Negative Number of negative probe pairs
Pairs Number of probe set specific probe pairs on the array
Pairs_Used Pairs used
Pairs_InAvg
Pos_Fraction Positive/Pairs_Used
Log_Avg Log average
PM_Excess Number of probe pairs where PM/MM exceeds the ratio limit (10 by default)
MM_Excess Number of probe pairs where MM/PM exceeds 1/ratio limit (10 by default)
Pos/Neg Positive/Negative
VALUE Average Difference Intensity
ABS_CALL Whether a probe set is present, marginal, or absent

Data table
ID_REF Positive Negative Pairs Pairs_Used Pairs_InAvg Pos_Fraction Log_Avg PM_Excess MM_Excess Pos/Neg VALUE ABS_CALL
1000_at 12 2 16 16 15 0.75 4.67 0 0 6.00 754.29 P
1001_at 13 0 16 16 15 0.81 3.40 0 0 Undef 240.32 P
1002_f_at 6 5 16 16 14 0.38 0.09 0 0 1.20 54.73 A
1003_s_at 10 3 16 16 14 0.62 1.58 0 0 3.33 -72.27 P
1004_at 9 1 16 16 15 0.56 3.03 0 0 9.00 380.11 P
1005_at 11 0 16 16 16 0.69 5.09 0 0 Undef 1012.85 P
1006_at 3 4 16 16 14 0.19 -0.77 0 0 0.75 -55.30 A
1007_s_at 12 1 16 16 13 0.75 4.52 0 0 12.00 286.41 P
1008_f_at 9 1 16 16 15 0.56 1.72 0 0 9.00 452.61 P
1009_at 14 0 16 16 16 0.88 6.64 1 0 Undef 2400.23 P
100_g_at 11 2 16 16 14 0.69 1.98 1 0 5.50 537.74 P
1010_at 3 5 16 16 15 0.19 -0.99 0 0 0.60 -23.06 A
1011_s_at 11 1 16 16 14 0.69 3.32 0 0 11.00 52.72 P
1012_at 3 6 16 16 15 0.19 -2.07 0 0 0.50 -29.77 A
1013_at 4 2 16 16 16 0.25 0.65 0 0 2.00 4.72 A
1014_at 9 1 16 16 15 0.56 3.67 0 0 9.00 284.88 P
1015_s_at 5 4 16 16 15 0.31 0.74 0 0 1.25 -367.34 A
1016_s_at 3 4 16 16 15 0.19 -0.19 0 0 0.75 3.72 A
1017_at 2 3 16 16 15 0.12 -0.05 0 0 0.67 -1.19 A
1018_at 5 4 16 16 13 0.31 -0.09 0 0 1.25 -43.30 A

Total number of rows: 12600

Table truncated, full table size 620 Kbytes.




Supplementary file Size Download File type/resource
GSM2858.CEL.gz 2.9 Mb (ftp)(http) CEL

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