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Sample GSM2873 Query DataSets for GSM2873
Status Public on Dec 06, 2002
Title H9RGV00102601
Sample type RNA
 
Source name trachea
Organism Homo sapiens
Extracted molecule total RNA
 
Description Large-scale analysis of the human transcriptome.
Trachea
Source: Clontech, http://www.clontech.com/archive/OCT01UPD/pdf/PremiumRNA.pdf
Analyzed using the Affymetrix MAS4 algorithm.
Background: Avg: 105.12 Stdv: 3.59 Min: 98.45 Max: 110.41
 
Submission date Nov 22, 2002
Last update date Mar 20, 2006
Contact name John R Walker
E-mail(s) [email protected]
Phone 858-812-1636
Organization name Genomics Institute of the Novartis Research Foundation
Lab Genetics Core
Street address 10675 John Jay Hopkins
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL91
Series (1)
GSE96 Large-scale analysis of the human transcriptome

Data table header descriptions
ID_REF Affymetrix Probe Set Identifier
Positive Number of positive probe pairs
Negative Number of negative probe pairs
Pairs Number of probe set specific probe pairs on the array
Pairs_Used Pairs used
Pairs_InAvg
Pos_Fraction Positive/Pairs_Used
Log_Avg Log average
PM_Excess Number of probe pairs where PM/MM exceeds the ratio limit (10 by default)
MM_Excess Number of probe pairs where MM/PM exceeds 1/ratio limit (10 by default)
Pos/Neg Positive/Negative
VALUE Average Difference Intensity
ABS_CALL Whether a probe set is present, marginal, or absent

Data table
ID_REF Positive Negative Pairs Pairs_Used Pairs_InAvg Pos_Fraction Log_Avg PM_Excess MM_Excess Pos/Neg VALUE ABS_CALL
1000_at 11 2 16 16 15 0.69 2.84 0 0 5.50 207.89 P
1001_at 8 1 16 16 14 0.50 2.05 0 0 8.00 154.10 P
1002_f_at 5 3 16 16 14 0.31 0.38 0 0 1.67 122.35 A
1003_s_at 7 3 16 16 15 0.44 0.37 0 0 2.33 -64.74 A
1004_at 6 5 16 16 15 0.38 0.17 0 0 1.20 -36.39 A
1005_at 15 0 16 16 16 0.94 5.62 0 0 Undef 2940.76 P
1006_at 6 3 16 16 15 0.38 0.38 0 0 2.00 12.16 A
1007_s_at 13 0 16 16 16 0.81 4.91 0 0 Undef 1667.81 P
1008_f_at 7 0 16 16 16 0.44 2.23 0 0 Undef 501.91 P
1009_at 15 0 16 16 16 0.94 6.17 0 0 Undef 2109.37 P
100_g_at 3 3 16 16 14 0.19 0.38 0 0 1.00 179.16 A
1010_at 3 7 16 16 14 0.19 -1.05 0 0 0.43 -36.70 A
1011_s_at 15 0 16 16 14 0.94 4.44 0 0 Undef 237.34 P
1012_at 5 6 16 16 14 0.31 0.06 0 0 0.83 -30.04 A
1013_at 9 0 16 16 15 0.56 3.93 0 0 Undef 45.76 P
1014_at 7 2 16 16 15 0.44 1.72 0 0 3.50 35.92 P
1015_s_at 4 5 16 16 15 0.25 0.49 0 0 0.80 -269.26 A
1016_s_at 5 2 16 16 15 0.31 1.20 0 0 2.50 19.31 A
1017_at 8 1 16 16 15 0.50 1.72 0 0 8.00 53.24 P
1018_at 4 4 16 16 15 0.25 -0.25 0 0 1.00 -92.33 A

Total number of rows: 12600

Table truncated, full table size 622 Kbytes.




Supplementary file Size Download File type/resource
GSM2873.CEL.gz 2.9 Mb (ftp)(http) CEL

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