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Sample GSM2877 Query DataSets for GSM2877
Status Public on Dec 06, 2002
Title H9RGV00102606
Sample type RNA
 
Source name HL60
Organism Homo sapiens
Extracted molecule total RNA
 
Description Large-scale analysis of the human transcriptome.
Promyelocytic leukemia
Source: ATCC
Analyzed using the Affymetrix MAS4 algorithm.
Background: Avg: 122.84 Stdv: 2.81 Min: 118.81 Max: 129.03
 
Submission date Nov 22, 2002
Last update date May 27, 2005
Contact name John R Walker
E-mail(s) [email protected]
Phone 858-812-1636
Organization name Genomics Institute of the Novartis Research Foundation
Lab Genetics Core
Street address 10675 John Jay Hopkins
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL91
Series (1)
GSE96 Large-scale analysis of the human transcriptome

Data table header descriptions
ID_REF Affymetrix Probe Set Identifier
Positive Number of positive probe pairs
Negative Number of negative probe pairs
Pairs Number of probe set specific probe pairs on the array
Pairs_Used Pairs used
Pairs_InAvg
Pos_Fraction Positive/Pairs_Used
Log_Avg Log average
PM_Excess Number of probe pairs where PM/MM exceeds the ratio limit (10 by default)
MM_Excess Number of probe pairs where MM/PM exceeds 1/ratio limit (10 by default)
Pos/Neg Positive/Negative
VALUE Average Difference Intensity
ABS_CALL Whether a probe set is present, marginal, or absent

Data table
ID_REF Positive Negative Pairs Pairs_Used Pairs_InAvg Pos_Fraction Log_Avg PM_Excess MM_Excess Pos/Neg VALUE ABS_CALL
1000_at 11 2 16 16 16 0.69 2.65 0 0 5.50 326.39 P
1001_at 3 1 16 16 14 0.19 0.28 0 0 3.00 13.91 A
1002_f_at 3 2 16 16 15 0.19 1.13 0 0 1.50 107.09 A
1003_s_at 9 3 16 16 15 0.56 1.36 0 0 3.00 52.25 P
1004_at 7 2 16 16 15 0.44 2.04 0 0 3.50 239.47 P
1005_at 6 3 16 16 15 0.38 0.41 0 0 2.00 -93.11 A
1006_at 4 4 16 16 15 0.25 -0.04 0 0 1.00 -36.62 A
1007_s_at 10 1 16 16 14 0.62 2.89 0 0 10.00 188.33 P
1008_f_at 9 0 16 16 15 0.56 2.51 0 0 Undef 525.76 P
1009_at 15 0 16 16 15 0.94 6.64 0 0 Undef 4973.81 P
100_g_at 5 2 16 16 14 0.31 1.12 0 0 2.50 185.22 A
1010_at 2 5 16 16 15 0.12 -0.80 0 0 0.40 -17.04 A
1011_s_at 13 0 16 16 14 0.81 4.13 0 0 Undef 320.31 P
1012_at 4 4 16 16 14 0.25 0.30 0 0 1.00 -1.00 A
1013_at 12 1 16 16 15 0.75 3.16 0 0 12.00 67.90 P
1014_at 9 0 16 16 15 0.56 2.91 0 0 Undef 278.63 P
1015_s_at 3 4 16 16 14 0.19 0.17 0 0 0.75 28.82 A
1016_s_at 2 1 16 16 16 0.12 -0.21 0 0 2.00 9.07 A
1017_at 5 2 16 16 15 0.31 1.46 0 0 2.50 39.54 A
1018_at 4 3 16 16 15 0.25 -0.06 0 0 1.33 -33.12 A

Total number of rows: 12600

Table truncated, full table size 622 Kbytes.




Supplementary file Size Download File type/resource
GSM2877.CEL.gz 2.9 Mb (ftp)(http) CEL

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