NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM2902574 Query DataSets for GSM2902574
Status Public on Nov 25, 2021
Title larvae overexpressing GFP, biological replica 1
Sample type RNA
 
Source name larvae over-exp GFP
Organism Drosophila melanogaster
Characteristics tissue: whole body
genotype: C564-Gal4; UAS-GFP
age: 3rd inster larvae
Treatment protocol Larvae for each genotype were homogenized in the Trizol solution (Invitrogen).
Growth protocol Progenies from crossing between C564-Gal4 and UAS-GFP or UAS-Gyc76C were developed until 3rd inster larvae at 25C.
Extracted molecule total RNA
Extraction protocol Extraction of total RNA was performed using RNeasy kit (Qiagen).
Label Biotin
Label protocol Biotinylated cRNA were prepared using an IVT Labeling Kit (Affymetrix).
 
Hybridization protocol Labeled cRNAs were hybridized on Affymetrix Drosophila Genome 2.0 arrays.
Scan protocol GeneChips were scanned using GeneChip Scanner 3000 (Affymeteix).
Description control larvae expressing GFP
Data processing The data were analyzed with Microarray Suite version 5.0 using Affymetrix default analysis settings.
 
Submission date Dec 26, 2017
Last update date Nov 25, 2021
Contact name Naoyuki Fuse
Organization name Tohoku University
Department Graduate School of Pharmaceutical Sciences
Lab Laboratory for Molecular Genetics
Street address Aoba 6-3, Aramaki, Aoba-ku
City Sendai
State/province Miyagi
ZIP/Postal code 980-8578
Country Japan
 
Platform ID GPL1322
Series (1)
GSE108508 Expression data of Gyc76C overexpressing larvae

Data table header descriptions
ID_REF
VALUE mas5 signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 165.648 P 0.000753643
AFFX-BioB-M_at 250.217 P 0.000856509
AFFX-BioB-3_at 145.787 P 0.0138105
AFFX-BioC-5_at 411.067 P 0.000753643
AFFX-BioC-3_at 292.432 P 0.000509415
AFFX-BioDn-5_at 817.113 P 0.000509415
AFFX-BioDn-3_at 2355.23 P 0.000195116
AFFX-CreX-5_at 6014.7 P 7.00668e-05
AFFX-CreX-3_at 8904.99 P 5.16732e-05
AFFX-DapX-5_at 4398.24 P 4.42873e-05
AFFX-DapX-M_at 5490.58 P 0.000258358
AFFX-DapX-3_at 8853.49 P 4.42873e-05
AFFX-LysX-5_at 368.213 P 4.42873e-05
AFFX-LysX-M_at 612.085 P 0.00159257
AFFX-LysX-3_at 1486.22 P 4.42873e-05
AFFX-PheX-5_at 999.326 P 4.42873e-05
AFFX-PheX-M_at 1184.26 P 7.00668e-05
AFFX-PheX-3_at 1079.5 P 4.42873e-05
AFFX-ThrX-5_at 1011.6 P 5.16732e-05
AFFX-ThrX-M_at 1403.04 P 4.42873e-05

Total number of rows: 18952

Table truncated, full table size 581 Kbytes.




Supplementary file Size Download File type/resource
GSM2902574_L_GFP_OE_1.CEL.gz 1.9 Mb (ftp)(http) CEL
GSM2902574_L_GFP_OE_1.CHP.gz 206.6 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap