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GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Dec 06, 2002 |
| Title |
M7TW00121472 |
| Sample type |
RNA |
| |
|
| Source name |
brown fat
|
| Organism |
Mus musculus |
| Extracted molecule |
total RNA |
| Extraction protocol |
as per manufacturer's instructions
|
| Label protocol |
as per manufacturer's instructions
|
| |
|
| Hybridization protocol |
as per manufacturer's instructions
|
| Scan protocol |
as per manufacturer's instructions
|
| Description |
Large-scale analysis of the mouse transcriptome.
Brown fat, interscapular depression
C57BL/6L, M/F pool (4 males, 3 females), 8-11 weeks
Analyzed using the Affymetrix MAS4 algorithm.
Background: Avg: 275.32 Stdv: 12.26 Min: 259.37 Max: 301.19
|
| |
|
| Submission date |
Nov 22, 2002 |
| Last update date |
Dec 14, 2006 |
| Contact name |
John R Walker |
| E-mail(s) |
[email protected]
|
| Phone |
858-812-1636
|
| Organization name |
Genomics Institute of the Novartis Research Foundation
|
| Lab |
Genetics Core
|
| Street address |
10675 John Jay Hopkins
|
| City |
San Diego |
| State/province |
CA |
| ZIP/Postal code |
92121 |
| Country |
USA |
| |
|
| Platform ID |
GPL32 |
| Series (1) |
| GSE97 |
Large-scale analysis of the mouse transcriptome |
|
| Data table header descriptions |
| ID_REF |
Affymetrix Probe Set Identifier |
| Positive |
Number of positive probe pairs |
| Negative |
Number of negative probe pairs |
| Pairs |
Number of probe set specific probe pairs on the array |
| Pairs_Used |
Pairs used |
| Pairs_InAvg |
|
| Pos_Fraction |
Positive/Pairs_Used |
| Log_Avg |
Log average |
| PM_Excess |
Number of probe pairs where PM/MM exceeds the ratio limit (10 by default) |
| MM_Excess |
Number of probe pairs where MM/PM exceeds 1/ratio limit (10 by default) |
| Pos/Neg |
Positive/Negative |
| VALUE |
Average Difference Intensity |
| ABS_CALL |
Whether a probe set is present, marginal, or absent |
| Data table |
| ID_REF |
Positive |
Negative |
Pairs |
Pairs_Used |
Pairs_InAvg |
Pos_Fraction |
Log_Avg |
PM_Excess |
MM_Excess |
Pos/Neg |
VALUE |
ABS_CALL |
| 100001_at |
7 |
3 |
16 |
16 |
15 |
0.44 |
0.86 |
0 |
0 |
2.33 |
-321.56 |
A |
| 100002_at |
8 |
4 |
16 |
16 |
15 |
0.50 |
1.06 |
0 |
0 |
2.00 |
-16.37 |
A |
| 100003_at |
10 |
1 |
16 |
16 |
15 |
0.62 |
2.59 |
0 |
0 |
10.00 |
878.73 |
P |
| 100004_at |
4 |
3 |
16 |
16 |
16 |
0.25 |
0.20 |
0 |
0 |
1.33 |
108.74 |
A |
| 100005_at |
6 |
2 |
16 |
16 |
14 |
0.38 |
1.06 |
0 |
0 |
3.00 |
782.56 |
M |
| 100006_at |
5 |
4 |
16 |
16 |
15 |
0.31 |
0.32 |
0 |
0 |
1.25 |
334.53 |
A |
| 100007_at |
4 |
0 |
16 |
16 |
15 |
0.25 |
0.76 |
0 |
0 |
Undef |
461.20 |
A |
| 100009_r_at |
7 |
3 |
16 |
16 |
16 |
0.44 |
2.00 |
0 |
0 |
2.33 |
45.74 |
A |
| 100010_at |
2 |
2 |
16 |
16 |
15 |
0.12 |
-0.00 |
0 |
0 |
1.00 |
83.44 |
A |
| 100011_at |
9 |
1 |
16 |
16 |
14 |
0.56 |
1.97 |
0 |
0 |
9.00 |
367.51 |
P |
| 100012_at |
5 |
5 |
16 |
16 |
16 |
0.31 |
0.05 |
0 |
0 |
1.00 |
-126.05 |
A |
| 100013_at |
4 |
2 |
16 |
16 |
15 |
0.25 |
-0.45 |
0 |
0 |
2.00 |
-203.21 |
A |
| 100014_at |
2 |
3 |
16 |
16 |
14 |
0.12 |
0.72 |
0 |
0 |
0.67 |
88.54 |
A |
| 100015_at |
3 |
3 |
16 |
16 |
14 |
0.19 |
-0.08 |
0 |
0 |
1.00 |
-217.83 |
A |
| 100016_at |
6 |
5 |
16 |
16 |
15 |
0.38 |
0.77 |
0 |
0 |
1.20 |
1606.53 |
A |
| 100017_at |
7 |
2 |
16 |
16 |
14 |
0.44 |
2.38 |
0 |
0 |
3.50 |
519.14 |
P |
| 100018_at |
3 |
3 |
16 |
16 |
15 |
0.19 |
0.38 |
0 |
0 |
1.00 |
-212.51 |
A |
| 100019_at |
4 |
3 |
16 |
16 |
15 |
0.25 |
0.04 |
0 |
0 |
1.33 |
-177.76 |
A |
| 100020_at |
6 |
5 |
16 |
16 |
15 |
0.38 |
0.49 |
0 |
0 |
1.20 |
0.40 |
A |
| 100021_at |
4 |
4 |
16 |
16 |
15 |
0.25 |
-0.18 |
0 |
0 |
1.00 |
-77.26 |
A |
Total number of rows: 10043
Table truncated, full table size 503 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM2922.CEL.gz |
3.1 Mb |
(ftp)(http) |
CEL |
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