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Sample GSM296616 Query DataSets for GSM296616
Status Public on May 20, 2009
Title K562_ICL670_50uM_dup2
Sample type RNA
 
Source name ICL670 50uM 16hrs
Organism Homo sapiens
Characteristics ICL670 50uM 16hrs, K562 cells
Extracted molecule total RNA
Extraction protocol RNeasy kit
Label Biotin
Label protocol One-cycle Target Labeling GeneChip Expression Analysis Technical Mannual, 701021 Rev.5 Section 2 Eukaryotic Sample and Array processing Chapter 1 Eukaryotic Target Prepartion
 
Hybridization protocol GeneChip Expression Analysis Technical Mannual, 701021 Rev.5 Hybridization Oven 640 110V (Affymetrix 800138) Wash and staining: Fluidics Station 450 (Affymetrix 00-0079)
Scan protocol GeneChip Scanner 3000 (Affymetrix 00-0074) GeneChip Operating Software ver.1.4 (Affymetrix 690036)
Description Description Effect of ICL670 in K562 cells
Data processing Data Processing GeneChip Operating Software ver.1.4 (Affymetrix 690036)
 
Submission date Jun 04, 2008
Last update date May 20, 2009
Contact name Junko H Ohyashiki
E-mail(s) [email protected]
Phone +81-3-3342-6111(ext.5999)
Fax +81-3-5381-6651
Organization name Tokyo Medical University
Department Intractable Immune System Diseases Research Center
Street address 6-7-1, Nishishinjuku, Shinjuku-ku
City Tokyo
ZIP/Postal code 160-0023
Country Japan
 
Platform ID GPL570
Series (1)
GSE11670 Transcriptional profiling of ICL670 treated K562 cells

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL P: present, M: marginal. A: absent
DETECTION_P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION_P-VALUE
AFFX-BioB-5_at 728.8 P 0.000754
AFFX-BioB-M_at 889.4 P 0.000044
AFFX-BioB-3_at 582 P 0.00011
AFFX-BioC-5_at 2184.6 P 0.00006
AFFX-BioC-3_at 3025.9 P 0.000044
AFFX-BioDn-5_at 4945.1 P 0.000044
AFFX-BioDn-3_at 9457.1 P 0.00007
AFFX-CreX-5_at 26723.6 P 0.000052
AFFX-CreX-3_at 32480.8 P 0.000044
AFFX-DapX-5_at 1305.6 P 0.000044
AFFX-DapX-M_at 2991.3 P 0.000581
AFFX-DapX-3_at 3947.1 P 0.000044
AFFX-LysX-5_at 189.6 P 0.000052
AFFX-LysX-M_at 282.5 P 0.002556
AFFX-LysX-3_at 643.2 P 0.00006
AFFX-PheX-5_at 310.9 P 0.00006
AFFX-PheX-M_at 372.2 P 0.000225
AFFX-PheX-3_at 358.4 P 0.00007
AFFX-ThrX-5_at 356.9 P 0.000095
AFFX-ThrX-M_at 553.6 P 0.000044

Total number of rows: 54675

Table truncated, full table size 1433 Kbytes.




Supplementary file Size Download File type/resource
GSM296616.CEL.gz 8.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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