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Status
Public on Dec 06, 2002
Title
M7TW01010664
Sample type
RNA
Source name
bone marrow
Organism
Mus musculus Extracted molecule
total RNA
Extraction protocol
as per manufacturer's instructions
Label protocol
as per manufacturer's instructions
Hybridization protocol
as per manufacturer's instructions
Scan protocol
as per manufacturer's instructions
Description
Large-scale analysis of the mouse transcriptome.
Submission date
Nov 22, 2002
Last update date
Dec 14, 2006
Contact name
John R Walker
E-mail(s)
[email protected] Phone
858-812-1636
Organization name
Genomics Institute of the Novartis Research Foundation
Lab
Genetics Core
Street address
10675 John Jay Hopkins
City
San Diego
State/province
CA
ZIP/Postal code
92121
Country
USA
Platform ID
GPL32 Series (1)
GSE97 Large-scale analysis of the mouse transcriptome
Data table header descriptions ID_REF Affymetrix Probe Set Identifier
Positive Number of positive probe pairs
Negative Number of negative probe pairs
Pairs Number of probe set specific probe pairs on the array
Pairs_Used Pairs used
Pairs_InAvg Pos_Fraction Positive/Pairs_Used
Log_Avg Log average
PM_Excess Number of probe pairs where PM/MM exceeds the ratio limit (10 by default)
MM_Excess Number of probe pairs where MM/PM exceeds 1/ratio limit (10 by default)
Pos/Neg Positive/Negative
VALUE Average Difference Intensity
ABS_CALL Whether a probe set is present, marginal, or absent
Data table ID_REF Positive Negative Pairs Pairs_Used Pairs_InAvg Pos_Fraction Log_Avg PM_Excess MM_Excess Pos/Neg VALUE ABS_CALL 100001_at 5
4
16
16
14
0.31
1.22
0
0
1.25
-90.27
A
100002_at 6
3
16
16
16
0.38
0.66
0
0
2.00
98.76
A
100003_at 6
3
16
16
16
0.38
0.50
0
0
2.00
-11.82
A
100004_at 6
2
16
16
15
0.38
0.63
0
0
3.00
376.08
A
100005_at 7
1
16
16
15
0.44
1.34
0
0
7.00
841.12
P
100006_at 2
4
16
16
13
0.12
-0.63
0
0
0.50
20.33
A
100007_at 5
0
16
16
15
0.31
0.72
0
0
Undef
580.09
A
100009_r_at 6
2
16
16
16
0.38
1.40
0
0
3.00
28.11
P
100010_at 5
0
16
16
15
0.31
0.75
0
0
Undef
275.43
A
100011_at 13
0
16
16
14
0.81
3.96
0
0
Undef
751.70
P
100012_at 10
0
16
16
16
0.62
2.93
0
0
Undef
2936.63
P
100013_at 3
4
16
16
14
0.19
-0.07
0
0
0.75
-58.78
A
100014_at 4
4
16
16
14
0.25
0.15
0
0
1.00
-11.74
A
100015_at 8
6
16
16
16
0.50
0.18
0
0
1.33
1003.74
A
100016_at 4
4
16
16
14
0.25
-0.11
0
0
1.00
487.63
A
100017_at 6
2
16
16
14
0.38
1.82
0
0
3.00
297.18
P
100018_at 5
4
16
16
14
0.31
0.44
0
0
1.25
-294.56
A
100019_at 4
5
16
16
15
0.25
-0.62
0
0
0.80
-428.88
A
100020_at 7
4
16
16
15
0.44
1.18
0
0
1.75
163.28
A
100021_at 3
5
16
16
15
0.19
-0.10
0
0
0.60
68.63
A
10043 502 Kbytes .Supplementary file Size Download File type/resource GSM2970.CEL.gz
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