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| Status |
Public on Dec 06, 2002 |
| Title |
M7TW01010686 |
| Sample type |
RNA |
| |
|
| Source name |
umbilical cord
|
| Organism |
Mus musculus |
| Extracted molecule |
total RNA |
| Extraction protocol |
as per manufacturer's instructions
|
| Label protocol |
as per manufacturer's instructions
|
| |
|
| Hybridization protocol |
as per manufacturer's instructions
|
| Scan protocol |
as per manufacturer's instructions
|
| Description |
Large-scale analysis of the mouse transcriptome.
Umbilical cord, E18 embryos
C57BL/6L, M/F pool (4 males, 3 females), 8-11 weeks
Analyzed using the Affymetrix MAS4 algorithm.
Background: Avg: 325.58 Stdv: 14.55 Min: 302.16 Max: 348.55
|
| |
|
| Submission date |
Nov 22, 2002 |
| Last update date |
Dec 14, 2006 |
| Contact name |
John R Walker |
| E-mail(s) |
[email protected]
|
| Phone |
858-812-1636
|
| Organization name |
Genomics Institute of the Novartis Research Foundation
|
| Lab |
Genetics Core
|
| Street address |
10675 John Jay Hopkins
|
| City |
San Diego |
| State/province |
CA |
| ZIP/Postal code |
92121 |
| Country |
USA |
| |
|
| Platform ID |
GPL32 |
| Series (1) |
| GSE97 |
Large-scale analysis of the mouse transcriptome |
|
| Data table header descriptions |
| ID_REF |
Affymetrix Probe Set Identifier |
| Positive |
Number of positive probe pairs |
| Negative |
Number of negative probe pairs |
| Pairs |
Number of probe set specific probe pairs on the array |
| Pairs_Used |
Pairs used |
| Pairs_InAvg |
|
| Pos_Fraction |
Positive/Pairs_Used |
| Log_Avg |
Log average |
| PM_Excess |
Number of probe pairs where PM/MM exceeds the ratio limit (10 by default) |
| MM_Excess |
Number of probe pairs where MM/PM exceeds 1/ratio limit (10 by default) |
| Pos/Neg |
Positive/Negative |
| VALUE |
Average Difference Intensity |
| ABS_CALL |
Whether a probe set is present, marginal, or absent |
| Data table |
| ID_REF |
Positive |
Negative |
Pairs |
Pairs_Used |
Pairs_InAvg |
Pos_Fraction |
Log_Avg |
PM_Excess |
MM_Excess |
Pos/Neg |
VALUE |
ABS_CALL |
| 100001_at |
6 |
4 |
16 |
16 |
15 |
0.38 |
0.96 |
0 |
0 |
1.50 |
-134.79 |
A |
| 100002_at |
5 |
3 |
16 |
16 |
15 |
0.31 |
0.41 |
0 |
0 |
1.67 |
-80.37 |
A |
| 100003_at |
4 |
4 |
16 |
16 |
16 |
0.25 |
0.46 |
0 |
0 |
1.00 |
30.68 |
A |
| 100004_at |
4 |
3 |
16 |
16 |
15 |
0.25 |
0.46 |
0 |
0 |
1.33 |
181.12 |
A |
| 100005_at |
5 |
1 |
16 |
16 |
15 |
0.31 |
0.96 |
0 |
0 |
5.00 |
480.90 |
A |
| 100006_at |
6 |
2 |
16 |
16 |
14 |
0.38 |
0.83 |
0 |
0 |
3.00 |
178.40 |
A |
| 100007_at |
6 |
1 |
16 |
16 |
15 |
0.38 |
0.91 |
0 |
0 |
6.00 |
541.47 |
P |
| 100009_r_at |
8 |
0 |
16 |
16 |
16 |
0.50 |
1.50 |
0 |
0 |
Undef |
26.72 |
P |
| 100010_at |
4 |
0 |
16 |
16 |
15 |
0.25 |
0.62 |
0 |
0 |
Undef |
205.60 |
A |
| 100011_at |
13 |
2 |
16 |
16 |
14 |
0.81 |
3.40 |
0 |
0 |
6.50 |
574.53 |
P |
| 100012_at |
5 |
4 |
16 |
16 |
16 |
0.31 |
0.68 |
0 |
0 |
1.25 |
285.81 |
A |
| 100013_at |
4 |
4 |
16 |
16 |
15 |
0.25 |
0.27 |
0 |
0 |
1.00 |
18.25 |
A |
| 100014_at |
2 |
1 |
16 |
16 |
14 |
0.12 |
0.43 |
0 |
0 |
2.00 |
35.04 |
A |
| 100015_at |
7 |
3 |
16 |
16 |
16 |
0.44 |
0.33 |
0 |
0 |
2.33 |
774.11 |
A |
| 100016_at |
4 |
3 |
16 |
16 |
14 |
0.25 |
0.80 |
0 |
0 |
1.33 |
632.23 |
A |
| 100017_at |
5 |
2 |
16 |
16 |
14 |
0.31 |
1.40 |
0 |
0 |
2.50 |
281.39 |
A |
| 100018_at |
4 |
3 |
16 |
16 |
16 |
0.25 |
-0.19 |
0 |
0 |
1.33 |
-335.08 |
A |
| 100019_at |
6 |
1 |
16 |
16 |
16 |
0.38 |
1.40 |
0 |
0 |
6.00 |
75.83 |
P |
| 100020_at |
8 |
3 |
16 |
16 |
15 |
0.50 |
1.32 |
0 |
0 |
2.67 |
305.94 |
A |
| 100021_at |
2 |
3 |
16 |
16 |
15 |
0.12 |
0.12 |
0 |
0 |
0.67 |
98.82 |
A |
Total number of rows: 10043
Table truncated, full table size 501 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM2977.CEL.gz |
3.1 Mb |
(ftp)(http) |
CEL |
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