GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM298657
Query DataSets for GSM298657
Status
Public on Aug 01, 2008
Title
DPTA_replicate_1
Sample type
RNA
Source name
Trophozoites treated 1 hr with 200 uM DPTA-NONOate
Organism
Entamoeba histolytica
Characteristics
Strain: HM1:IMSS
Media: TYI
Long term axenic growth
Extracted molecule
total RNA
Extraction protocol
Trizol_RNeasy
Label
biotin
Label protocol
Affymetrix single amplification
Hybridization protocol
Standard Affymetrix
Scan protocol
Standard Affymetrix
Description
Trophozoites treated 1 hr with 200 uM DPTA-NONOate
Data processing
GCOS scaling only- target 500
Submission date
Jun 17, 2008
Last update date
Jun 18, 2008
Contact name
Gretchen Marie Ehrenkaufer
E-mail(s)
[email protected]
Organization name
Stanford Uninversity
Department
Microbiology and Immunology
Lab
Singh
Street address
Grant S-143, 300 Pasteur Dr.
City
Stanford
State/province
CA
ZIP/Postal code
94305
Country
USA
Platform ID
GPL4622
Series (1)
GSE11811
Effect of treatment with H2O2 or DPTA-NONOate on E. histolytica
Data table header descriptions
ID_REF
VALUE
Scaled Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
Data table
ID_REF
VALUE
ABS_CALL
1.m00596_at
20558.4
P
1.m00597_at
1873.3
P
1.m00599_at
4.3
A
1.m00600_x_at
17.8
A
1.m00602_at
18.2
A
1.m00602_x_at
50.6
A
1.m00603_at
163.9
P
1.m00603_x_at
118.1
P
1.m00606_s_at
362.4
P
1.m00607_at
19.8
A
1.m00607_x_at
141.5
A
1.m00608_at
441.5
P
1.m00608_x_at
368.7
P
1.m00609_at
78.6
A
1.m00609_x_at
25.5
A
1.m00610_at
71.8
A
1.m00611_at
127.2
P
1.m00611_x_at
69.9
M
1.m00613_at
1617.8
P
1.m00613_x_at
1326.3
P
Total number of rows:
11478
Table truncated, full table size
247 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM298657.CEL.gz
1.8 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
