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GEO accession:
Sample GSM298662
Query DataSets for GSM298662
Status
Public on Aug 01, 2008
Title
Rahman H2O2 replicate 3
Sample type
RNA
Source name
Trophozoites treated 1 hr with 1mM H2O2
Organism
Entamoeba histolytica
Characteristics
Strain: HM1:IMSS
Media: TYI
Long term axenic growth
Extracted molecule
total RNA
Extraction protocol
Trizol_RNeasy
Label
biotin
Label protocol
Affymetrix single amplification
Hybridization protocol
Standard Affymetrix
Scan protocol
Standard Affymetrix
Description
Trophozoites treated 1 hr with 1mM H2O2
Data processing
GCOS scaling only- target 500
Submission date
Jun 17, 2008
Last update date
Jun 18, 2008
Contact name
Gretchen Marie Ehrenkaufer
E-mail(s)
[email protected]
Organization name
Stanford Uninversity
Department
Microbiology and Immunology
Lab
Singh
Street address
Grant S-143, 300 Pasteur Dr.
City
Stanford
State/province
CA
ZIP/Postal code
94305
Country
USA
Platform ID
GPL4622
Series (1)
GSE11811
Effect of treatment with H2O2 or DPTA-NONOate on E. histolytica
Data table header descriptions
ID_REF
VALUE
Scaled Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
Data table
ID_REF
VALUE
ABS_CALL
1.m00596_at
13817.3
P
1.m00597_at
2364.2
P
1.m00599_at
3.2
A
1.m00600_x_at
43.8
P
1.m00602_at
86.5
P
1.m00602_x_at
68.5
P
1.m00603_at
147.8
P
1.m00603_x_at
148.7
P
1.m00606_s_at
784.5
P
1.m00607_at
305.4
P
1.m00607_x_at
481.9
P
1.m00608_at
769
P
1.m00608_x_at
672
P
1.m00609_at
82.2
P
1.m00609_x_at
104.2
P
1.m00610_at
10.5
A
1.m00611_at
182.9
P
1.m00611_x_at
118.7
P
1.m00613_at
2444.5
P
1.m00613_x_at
1787.5
P
Total number of rows:
11478
Table truncated, full table size
249 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM298662.CEL.gz
2.0 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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