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Sample GSM301053 Query DataSets for GSM301053
Status Public on Aug 11, 2008
Title SLE88_18_0702
Sample type RNA
 
Source name SLE88_18_0702
Organism Homo sapiens
Characteristics Age: 13 yrs, when sample taken
Gender: F
Ethnicity: Not Hispanic or Latino
Race: White
Illness: SLE
Extracted molecule total RNA
Extraction protocol RNeasy Mini
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
 
Hybridization protocol EukGE-WS2
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 System.
Description A female subject diagnosed with SLE where age 13 yrs, when sample taken. Sample used in Tx SLE - U scores.
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
 
Submission date Jun 26, 2008
Last update date Aug 11, 2008
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL96
Series (3)
GSE11907 A Modular Analysis Framework for Blood Genomics Studies: Application to Systemic Lupus Erythematosus
GSE11908 Construction of a modular analysis framework for blood Genomics Studies
GSE11909 A modular analysis framework for the discovery of biomarkers of Systemic Lupus Erythematosus

Data table header descriptions
ID_REF Affymetrix probe set identifier
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
ID_REF VALUE ABS_CALL
AFFX-BioB-5_at 476 P
AFFX-BioB-M_at 1382.1 P
AFFX-BioB-3_at 563 P
AFFX-BioC-5_at 1878.5 P
AFFX-BioC-3_at 1417.4 P
AFFX-BioDn-5_at 1126.8 P
AFFX-BioDn-3_at 7426 P
AFFX-CreX-5_at 13120.6 P
AFFX-CreX-3_at 16585.1 P
AFFX-DapX-5_at 55.1 P
AFFX-DapX-M_at 19.2 A
AFFX-DapX-3_at 6 A
AFFX-LysX-5_at 11 A
AFFX-LysX-M_at 23 A
AFFX-LysX-3_at 34.7 A
AFFX-PheX-5_at 4.4 A
AFFX-PheX-M_at 5.2 A
AFFX-PheX-3_at 64.5 A
AFFX-ThrX-5_at 8.7 A
AFFX-ThrX-M_at 9.7 A

Total number of rows: 22283

Table truncated, full table size 401 Kbytes.




Supplementary file Size Download File type/resource
GSM301053.CEL.gz 2.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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