|
| Status |
Public on Aug 11, 2008 |
| Title |
SLE90_112002A |
| Sample type |
RNA |
| |
|
| Source name |
SLE90_112002A, Lynda SLE\A-chips
|
| Organism |
Homo sapiens |
| Characteristics |
Age: 11 yrs, when sample taken.
Gender: F
Ethnicity: Hispanic or Latino
Race: (Race Not Reported)
Illness: SLE
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNeasy Mini
|
| Label |
biotin
|
| Label protocol |
Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
|
| |
|
| Hybridization protocol |
EukGE-WS2v4
|
| Scan protocol |
GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 System.
|
| Description |
A female subject diagnosed with SLE where age 11 yrs, when sample taken. Sample used in Tx SLE - U scores.
|
| Data processing |
The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
|
| |
|
| Submission date |
Jun 26, 2008 |
| Last update date |
Aug 11, 2008 |
| Contact name |
Damien Chaussabel |
| E-mail(s) |
[email protected]
|
| Organization name |
Baylor Institute for Immunology Research
|
| Street address |
3434 Live Oak
|
| City |
Dallas |
| State/province |
TX |
| ZIP/Postal code |
75204 |
| Country |
USA |
| |
|
| Platform ID |
GPL96 |
| Series (3) |
| GSE11907 |
A Modular Analysis Framework for Blood Genomics Studies: Application to Systemic Lupus Erythematosus |
| GSE11908 |
Construction of a modular analysis framework for blood Genomics Studies |
| GSE11909 |
A modular analysis framework for the discovery of biomarkers of Systemic Lupus Erythematosus |
|
